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Citing CMDGA
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Annotation type
13
gene expression
7
accessible chromatin
histone modifications
2
target gene predictions
2
variant allelic effects
1
binding sites
1
candidate regulatory elements
1
chromatin state
Annotation Category
2
Target gene links
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
1
in vitro differentiated cells
Biosample term
2
hepatocyte
1
hepatic stellate cell
Organ
2
epithelium
2
liver
Life stage
1
unknown
Date released
1
May, 2021
1
September, 2022
Software used
1
abc
1
r
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
2
AMP
1
ENCODE
RFA
2
AMP
annotation_type!
histone modifications
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FileSet
DSR361WHM
released
Annotation file set
: Target gene predictions for BSS00554 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR604IOP
released
Annotation file set
: enhancer-gene predicton of hepatocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP