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Citing CMDGA
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Annotation type
4
accessible chromatin
3
target gene predictions
2
candidate regulatory elements
1
binding sites
1
chromatin state
histone modifications
Annotation Category
3
Target gene links
Annotation type Category
2
ATAC-seq
2
DNase-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
cell line
1
primary cell
Biosample term
19
A549
17
lung
13
left lung
11
right lung
10
pituitary stalk
4
fibroblast of lung
3
upper lobe of left lung
2
IMR-90
2
PC-9
2
type II pneumocyte
1
NCI-H226 cell
1
NCI-H460 cell
1
WI38
1
lung microvascular endothelial cell
1
type I pneumocyte
Disease term
1
lung adenocarcinoma
Organ
3
lung
1
epithelium
0
pituitary gland
Life stage
1
unknown
Date released
1
May, 2021
1
November, 2021
1
September, 2022
Software used
2
abc
1
r
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
annotation_type!
histone modifications
Showing 3 of 3 results
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Download
FileSet
DSR808UQF
released
Annotation file set
: Target gene predictions for BSS01415 PC-9 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR923OSI
released
Annotation file set
: Target gene predictions of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR988JBC
released
Annotation file set
: enhancer-gene predicton of PC-9-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP