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Schema
Citing CMDGA
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Annotation type
7
candidate regulatory elements
5
target gene predictions
4
accessible chromatin
4
chromatin state
1
binding sites
1
histone modifications
Annotation Category
5
Target gene links
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
64
cell line
8
tissue
7
in vitro differentiated cells
5
primary cell
Biosample term
5
trophoblast cell
Organ
114
epithelium
50
connective tissue
26
skin of body
24
pancreas
18
vasculature
12
blood vessel
11
mammary gland
9
extraembryonic component
9
kidney
8
heart
8
intestine
8
lung
7
penis
5
embryo
5
musculature of body
4
adrenal gland
4
brain
4
liver
4
stomach
4
vein
3
artery
3
bone element
3
bone marrow
3
bronchus
3
esophagus
3
eye
3
large intestine
3
lymphatic vessel
3
prostate gland
2
small intestine
1
gonad
1
limb
1
mouth
1
ovary
1
placenta
1
spinal cord
1
thyroid gland
1
uterus
Life stage
4
embryonic
Date released
4
September, 2022
1
May, 2021
Software used
4
r
1
abc
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
annotation_type!
representative DNase hypersensitivity sites
biosample_term_name!
lymphocyte of B lineage (iPSC)
Showing 5 of 5 results
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Download
FileSet
DSR493RDI
released
Annotation file set
: Target gene predictions for BSS01856 trophoblast cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR220SQZ
released
Annotation file set
: Target gene predictions for BSS01855 trophoblast cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR277VMW
released
Annotation file set
: Target gene predictions for BSS01853 trophoblast cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838IWD
released
Annotation file set
: Target gene predictions for BSS01852 trophoblast cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR630TXR
released
Annotation file set
: enhancer-gene predicton of trophoblast_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP