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Schema
Citing CMDGA
Clear Filters
Annotation type
8
target gene predictions
2
binding sites
2
candidate regulatory elements
2
chromatin state
1
accessible chromatin
1
histone modifications
Annotation Category
8
Target gene links
Annotation type Category
6
HiC
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
6
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
21
stomach
20
heart
19
A549
19
HFFc6
17
adrenal gland
17
lung
17
small intestine
16
brain
16
muscle of arm
15
placenta
14
kidney
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
11
right lung
10
hematopoietic multipotent progenitor cell
10
liver
10
pituitary stalk
10
right kidney
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
GM12878
8
H9
8
adipose tissue
8
psoas muscle
8
spinal cord
8
spleen
7
heart left ventricle
7
lymphocyte
7
sigmoid colon
6
MCF-7
6
adipocyte
6
dendritic cell
6
ovary
5
body of pancreas
5
gastrocnemius medialis
5
heart right ventricle
5
muscle of trunk
5
neural progenitor cell
5
pancreas
5
thyroid gland
5
transverse colon
4
CyT49
4
HUES8
4
aorta
4
chorionic villus
4
endocrine pancreas
4
iPSC derived cell line
4
mesenchymal stem cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
chorion membrane
3
coronary artery
3
endometrium adenocarcinoma
3
esophagus
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
mesendoderm
3
retina
3
skeletal muscle tissue
3
testis
3
tibial nerve
3
trophoblast
3
upper lobe of left lung
2
22Rv1
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T47D
2
THP-1
2
U937
2
angular gyrus
2
ascending aorta
2
bipolar neuron
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
duodenal mucosa
2
endodermal cell
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
frontal cortex
2
iPS DF 19.11
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
omental fat pad
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right cardiac atrium
2
right renal cortex interstitium
2
right renal pelvis
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
thoracic aorta
2
tibial artery
2
tongue
2
trophoblast cell
2
urinary bladder
2
uterus
2
vagina
1
8988T
1
A172
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
C4-2B
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
EndoC_BH1
1
G401
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12875
1
GM12891
1
GM12892
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM23248
1
GM23338
1
H4
1
H54
1
HCT-116 cell
Organ
8
blood
8
bodily fluid
Life stage
1
adult
Date released
6
February, 2024
1
May, 2021
1
September, 2022
Software used
1
abc
1
r
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
representative DNase hypersensitivity sites
biosample_type!
primary cell
Showing 8 of 8 results
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Download
FileSet
DSR413SNG
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in situ crosslinking, with SDS treatment, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR828CUR
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in situ crosslinking, without SDS treatment, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR519UOA
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, NcoI digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR974VNF
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR815MBX
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, with RNase A digestion, without HindIII digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR193AOO
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, HindIII digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR835PAE
released
Annotation file set
: Target gene predictions for BSS00439 GM12878 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR117MIS
released
Annotation file set
: enhancer-gene predicton of GM12878-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP