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Schema
Citing CMDGA
Clear Filters
Annotation type
8
accessible chromatin
3
differential activity
3
gene expression
3
target gene predictions
variant allelic effects
Annotation Category
3
Target gene links
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
5
body of pancreas
5
pancreas
4
endocrine pancreas
4
pancreatic delta cell
3
epithelial cell of prostate
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
testis
3
type B pancreatic cell
2
22Rv1
2
LNCaP clone FGC
2
Panc1
2
prostate gland
1
8988T
1
C4-2B
1
EndoC_BH1
1
HPDE6-E6E7
1
LNCAP
1
NT2-D1 cell
1
PC-3
1
RWPE1
1
RWPE2
1
VCaP cell
1
islet of Langerhans
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
Organ
3
epithelium
3
pancreas
0
prostate gland
0
testis
Life stage
1
adult
Date released
2
January, 2021
1
February, 2021
Software used
3
cicero
Lab
3
Kyle Gaulton, UCSD
Project
2
T1D
1
AMP
RFA
2
T1D
1
AMP
annotation_type!
variant allelic effects
Showing 3 of 3 results
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Download
FileSet
DSR166ECC
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of INSlow_beta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR131NAF
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of INShigh_beta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR376KYK
released
Annotation file set
: pancreatic beta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP