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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
3
target gene predictions
1
eQTL
1
gene expression
1
variant allelic effects
Annotation Category
3
Target gene links
1
Genetic variant effects
Annotation type Category
ChIP-seq
16
DNase-seq
2
ATAC-seq
1
pCHi-C
1
snATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
tissue
Biosample term
52
HeLa-S3
38
H1-hESC
19
HFFc6
17
K562
15
CD14-positive monocyte
10
fibroblast
10
pituitary stalk
9
endothelial cell
9
pericyte cell
8
smooth muscle cell
7
GM12878
7
H9
7
macrophage
6
dendritic cell
6
lymphocyte
6
olfactory receptor cell
5
CD8-positive, alpha-beta T cell
5
adipocyte
5
pancreatic delta cell
4
CyT49
4
HUES8
4
cardiomyocytes (cardiac muscle cell)
4
heart left ventricle
4
hepatocyte
4
iPSC derived cell line
4
keratinocyte
4
pancreas
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic ductal cell
4
psoas muscle
3
CD4-positive, alpha-beta T cell
3
adipose tissue
3
adrenal gland
3
astrocyte
3
basal cell
3
cardiac muscle cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of umbilical vein
3
enterocyte
3
heart
3
heart right ventricle
3
liver
3
monocyte
3
myofibroblast cell
3
pancreatic A cell
3
thymus
3
type B pancreatic cell
3
type II pneumocyte
2
cardiac fibroblast
2
muscle of leg
2
B cell
2
BJAB cell
2
CD4-positive helper T cell
2
EndoC_BH1
2
HCT116
2
HepG2
2
Jurkat
2
MCF 10A cell
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Schwann cell
2
T cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
aorta
2
blood vessel smooth muscle cell
2
body of pancreas
2
cardiac precursors (cardiac muscle cell)
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythroblast
2
gabaergic neuron
2
glutamatergic neuron
2
goblet cell
2
islet of Langerhans
2
luminal epithelial cell of mammary gland
2
lymphocyte of B lineage (iPSC)
2
mammary gland epithelial cell
2
mast cell
2
megakaryocyte
2
memory B cell
2
mesenchymal stem cell
2
mesendoderm
2
mesothelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
ovary
2
pancreatic polypeptide-secreting cell
2
parietal cell
2
peptic cell
2
right atrium auricular region
2
sigmoid colon
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
small intestine
2
smooth muscle cell of the esophagus
2
spleen
2
stomach
2
thyroid follicular cell
2
tibial artery
2
tibial nerve
2
trophoblast cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
A549
1
A673
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
H7-hESC
1
HAP-1
1
HCT-116 cell
1
HT-29
1
Heart fetal (cardiac muscle cell)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
Liver fetal (hepatocyte)
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Preadipose SGBS cell line (adipocyte)
1
SK-N-SH
1
Satellite Cells, Skeletal Muscle
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar macrophage
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
beige adipocyte
1
bipolar neuron
1
bladder (urinary bladder)
1
brain
1
brain pericyte
1
breast epithelium
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac ventricle
1
caudate nucleus
1
cell
1
cerebellum (Hemisphere)
1
choroid plexus epithelial cell
1
ciliated cell
1
club cell
1
colon goblet cell
1
common myeloid progenitor, CD34-positive
1
conventional dendritic cell
1
dorsolateral prefrontal cortex
1
eccrine cell
1
embryonic stem cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epithelial cell of prostate
1
epithelial cell of proximal tubule
1
esophagus
1
fat cell
1
fibroblast cell line
Organ
3
adrenal gland
3
epithelium
1
lung
Date released
2
November, 2021
1
February, 2024
1
March, 2020
Software used
2
abc
1
deltasvm
1
nospecificsoft_customcode
Lab
3
Bing Ren, UCSD
1
AMP-T2D consortium
Project
2
AMP
2
ENCODE
RFA
2
AMP
2
ENCODE3
annotation_type_category!
ChIP-seq
Showing 4 of 4 results
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Download
FileSet
DSR430IHA
released
Annotation file set
: Target gene predictions of Transitional Zone Cortical Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR923ULB
released
Annotation file set
: Target gene predictions of Cortical Epithelial-like from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR192HXJ
released
Annotation file set
: Variant allelic effects annotation of Adrenal cortical cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR063XFX
released
Annotation file set
: A target gene prediction annotation in Human Lung of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP