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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
accessible chromatin
9
gene expression
3
Fine-mapped variants
3
chromatin state
3
differential activity
2
eQTL
2
variant allelic effects
1
binding sites
1
caQTL
1
histone modifications
1
target gene predictions
Annotation Category
2
Genetic variant effects
1
Target gene links
Annotation type Category
DNase-seq
3
ATAC-seq
2
ChIP-seq
1
H3K27ac ChIP-Seq
1
HiC
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
cell line
1
tissue
Biosample term
51
HeLa-S3
37
H1-hESC
19
HFFc6
16
K562
10
fibroblast
9
endothelial cell
9
pericyte cell
8
smooth muscle cell
6
GM12878
6
H9
6
lymphocyte
6
macrophage
6
olfactory receptor cell
5
pancreatic delta cell
4
CyT49
4
HUES8
4
cardiomyocytes (cardiac muscle cell)
4
iPSC derived cell line
4
pancreatic alpha cell
4
pancreatic beta cell
3
CD4-positive, alpha-beta T cell
3
CD8-positive, alpha-beta T cell
3
basal cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
heart left ventricle
3
keratinocyte
3
myofibroblast cell
3
pancreatic acinar cell
3
pancreatic ductal cell
3
psoas muscle
3
type II pneumocyte
2
EndoC_BH1
2
HCT116
2
MIN6
2
Schwann cell
2
T cell
2
activated CD4-positive, alpha-beta T cell
2
adipose tissue
2
aorta
2
astrocyte
2
blood vessel smooth muscle cell
2
cardiac precursors (cardiac muscle cell)
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
gabaergic neuron
2
glutamatergic neuron
2
goblet cell
2
heart right ventricle
2
hepatocyte
2
islet of Langerhans
2
liver
2
luminal epithelial cell of mammary gland
2
lymphocyte of B lineage (iPSC)
2
mammary gland epithelial cell
2
mast cell
2
megakaryocyte
2
memory B cell
2
mesothelial cell
2
monocyte
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
pancreas
2
pancreatic A cell
2
pancreatic polypeptide-secreting cell
2
parietal cell
2
peptic cell
2
skeletal muscle fiber
2
smooth muscle cell of the esophagus
2
thymus
2
thyroid follicular cell
2
type B pancreatic cell
2
vascular associated smooth muscle cell
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
B cell
1
B-lymphoblastoid cell line
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
Heart fetal (cardiac muscle cell)
1
HepG2
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Liver fetal (hepatocyte)
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
1
Preadipose SGBS cell line (adipocyte)
1
Satellite Cells, Skeletal Muscle
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
adrenal gland
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar macrophage
1
basal cell of epidermis
1
bladder (urinary bladder)
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac muscle cell
1
cell
1
ciliated cell
1
club cell
1
colon goblet cell
1
conventional dendritic cell
1
coronary artery
1
dorsolateral prefrontal cortex
1
eccrine cell
1
embryonic stem cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
endothelial cell of umbilical vein
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
erythroblast
1
esophagus
1
fat cell
1
fibroblast cell line
1
fibroblast of cardiac tissue
1
foveolar cell of stomach
1
gastric (mucosa of stomach)
1
granular cell of epidermis
1
granulosa cell
1
heart
1
inflammatory macrophage
1
intestinal tuft cell
1
luminal epithelial cell of prostatic duct
1
lung
1
luteal cell
1
lymphocyte of B lineage
1
mature NK T cell
1
melanocyte
1
mesenchymal stem cell
1
mesendoderm
1
microglial cell
1
myoepithelial cell
1
natural killer cell
1
natural killer cell mediated cytotoxicity
1
neural progenitor cell
1
neutrophil
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
oligodendrocyte
1
oligodendrocyte precursor cell
1
ovary
1
pancreatic endocrine cell
1
pancreatic stellate cell
1
paneth cell
1
plasma cell
1
plasmacytoid dendritic cell
1
purified protein and synthetic DNA oligo binding assay
1
regular atrial cardiac myocyte
1
regulatory T cell
1
respiratory goblet cell
1
right atrium auricular region
1
right cardiac atrium
1
schwann cell
1
sigmoid colon
1
skeletal muscle fibroblast
1
skeletal muscle satellite cell
1
skin fibroblast
1
small intestine
1
small intestine goblet cell
1
spleen
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
subcutaneous adipose tissue
thoracic aorta
1
tibial artery
1
tibial nerve
1
trophoblast
1
type I cell of adrenal cortex
1
type I muscle cell
1
type I pneumocyte
1
type II cell of adrenal cortex
1
type II muscle cell
1
undifferentiated ESC (H9 cell line)
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
1
white adipose cell
Organ
2
epithelium
2
pancreas
1
artery
1
blood vessel
1
heart
1
vasculature
Date released
2
May, 2020
1
March, 2020
Software used
2
deltasvm
1
hiccups
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type_category!
DNase-seq
biosample_term_name!
thoracic aorta
Showing 3 of 3 results
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Download
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR985HJQ
released
Annotation file set
: Genetic variants with deltaSVM predictions in coronary artery ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP