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Schema
Citing CMDGA
Clear Filters
Annotation type
8
accessible chromatin
8
gene expression
3
differential activity
1
binding sites
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
Target gene links
Annotation type Category
1
ATAC-seq
1
HiC
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
22
heart
21
stomach
19
HFFc6
17
adrenal gland
17
brain
17
muscle of arm
17
small intestine
15
kidney
15
placenta
14
large intestine
14
muscle of leg
14
thymus
13
muscle of back
11
right kidney
10
hematopoietic multipotent progenitor cell
10
liver
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
9
adipose tissue
9
heart left ventricle
9
left kidney
8
GM12878
8
H9
8
psoas muscle
8
spinal cord
8
spleen
7
lymphocyte
7
sigmoid colon
6
MCF-7
6
adipocyte
6
body of pancreas
6
dendritic cell
6
heart right ventricle
6
ovary
6
pancreas
5
coronary artery
5
gastrocnemius medialis
5
muscle of trunk
5
neural progenitor cell
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CyT49
4
HUES8
4
aorta
4
cardiomyocytes (cardiac muscle cell)
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
iPSC derived cell line
4
mesenchymal stem cell
4
retina
4
right atrium auricular region
4
tibial artery
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
ascending aorta
3
breast epithelium
3
chorion membrane
3
endometrium adenocarcinoma
3
esophagus
3
frontal cortex
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
mesendoderm
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
testis
3
thoracic aorta
3
trophoblast
2
muscle of leg
2
22Rv1
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
EndoC_BH1
2
GM18507
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MIN6
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
T47D
2
THP-1
2
U937
2
angular gyrus
2
bipolar neuron
2
cardiac precursors (cardiac muscle cell)
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
duodenal mucosa
2
endodermal cell
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
globus pallidus
2
iPS DF 19.11
2
islet of Langerhans
2
left cardiac atrium
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
occipital lobe
2
omental fat pad
2
parathyroid adenoma
2
pons
2
prostate gland
2
putamen
2
right cardiac atrium
2
stomach smooth muscle
2
substantia nigra
2
superior temporal gyrus
2
temporal lobe
2
tongue
2
trophoblast cell
2
urinary bladder
2
uterus
2
vagina
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
8988T
1
A172
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
Adipose SGBS cell line (adipocyte)
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
C4-2B
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
G401
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12875
1
GM12891
1
GM12892
1
GM18486
1
GM18505
1
GM18508
Organ
2
epithelium
2
pancreas
Date released
1
March, 2020
1
May, 2020
Software used
1
deltasvm
1
hiccups
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
GM19238
biosample_type!
primary cell
organ_slims!
lung
Showing 2 of 2 results
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Download
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP