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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
7
accessible chromatin
7
chromatin state
5
candidate regulatory elements
3
target gene predictions
2
gene expression
2
histone modifications
1
binding sites
1
variant allelic effects
Annotation Category
3
Target gene links
1
Genetic variant effects
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
snATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
cell line
1
primary cell
Biosample term
54
HeLa-S3
38
H1-hESC
22
K562
22
heart
19
HFFc6
19
stomach
18
A549
17
brain
17
lung
17
muscle of arm
16
small intestine
15
adrenal gland
15
kidney
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
13
thymus
11
right kidney
11
right lung
10
hematopoietic multipotent progenitor cell
10
renal cortex interstitium
10
renal pelvis
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
heart left ventricle
9
left kidney
9
liver
8
adipose tissue
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
lymphocyte
7
psoas muscle
7
spinal cord
7
spleen
6
T cell
6
fibroblast
6
heart right ventricle
6
mononuclear cell
6
olfactory receptor cell
6
sigmoid colon
5
MCF-7
5
body of pancreas
5
macrophage
5
neural progenitor cell
5
ovary
5
pancreas
5
tibial nerve
5
trophoblast cell
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
aorta
4
cardiomyocytes (cardiac muscle cell)
4
caudate nucleus
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
foreskin keratinocyte
4
gastrocnemius medialis
4
hepatocyte
4
iPSC derived cell line
4
mammary gland epithelial cell
4
muscle of trunk
4
natural killer cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
regulatory T cell
4
retina
4
right atrium auricular region
4
thyroid gland
4
tibial artery
4
transverse colon
3
HCT116
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
adipocyte
3
ascending aorta
3
cardiac muscle cell
3
chorion membrane
3
endometrium adenocarcinoma
3
endothelial cell
3
enterocyte
3
epithelial cell of esophagus
3
esophagus
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
frontal cortex
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
mesenchymal stem cell
3
myofibroblast cell
3
naive T cell
3
neurosphere
3
neutrophil
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
smooth muscle cell
3
testis
3
thoracic aorta
3
trophoblast
3
upper lobe of left lung
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
EndoC_BH1
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
HepG2
2
LNCaP clone FGC
2
MIN6
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
Schwann cell
2
T47D
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
breast epithelium
2
bronchial epithelial cell
2
cardiac precursors (cardiac muscle cell)
2
cerebellum
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
foreskin fibroblast
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
goblet cell
2
hepatic stellate cell
2
islet of Langerhans
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
medulla oblongata
2
megakaryocyte
2
mesendoderm
2
midbrain
2
middle frontal gyrus
2
monocyte
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
occipital lobe
2
omental fat pad
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
parathyroid adenoma
2
pons
2
prostate gland
2
putamen
2
renal cortical epithelial cell
2
right cardiac atrium
2
skeletal muscle cell
2
skeletal muscle fiber
Organ
3
connective tissue
1
embryo
Life stage
1
adult
1
embryonic
1
unknown
Date released
3
September, 2022
1
February, 2024
Software used
abc
3
r
1
deltasvm
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
4
AMP
RFA
4
AMP
biosample_term_name!
placenta
software_used.software.name!
abc
Showing 4 of 4 results
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Download
FileSet
DSR472ULW
released
Annotation file set
: Target gene predictions for BSS00483 H7-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619LYX
released
Annotation file set
: Target gene predictions for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP