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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
5
chromatin state
5
target gene predictions
2
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
5
Target gene links
1
Genetic variant effects
Annotation type Category
5
DNase-seq
4
ATAC-seq
4
H3K27ac ChIP-Seq
1
ChIP-seq
1
snATAC-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
primary cell
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
22
heart
21
stomach
19
A549
19
HFFc6
18
CD14-positive monocyte
17
adrenal gland
17
brain
17
lung
17
muscle of arm
17
small intestine
15
kidney
15
placenta
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
11
common myeloid progenitor, CD34-positive
11
right kidney
11
right lung
fibroblast
10
liver
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
9
adipose tissue
9
endothelial cell
9
heart left ventricle
9
hematopoietic multipotent progenitor cell
9
left kidney
9
pericyte cell
9
smooth muscle cell
8
B cell
GM12878
8
H9
8
psoas muscle
8
spinal cord
8
spleen
7
lymphocyte
7
macrophage
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
adipocyte
6
body of pancreas
6
dendritic cell
6
heart right ventricle
6
olfactory receptor cell
6
ovary
6
pancreas
5
CD8-positive, alpha-beta T cell
5
CD8-positive, alpha-beta memory T cell
5
T cell
5
coronary artery
5
endothelial cell of umbilical vein
5
gastrocnemius medialis
5
hepatocyte
5
mononuclear cell
5
muscle of trunk
5
natural killer cell
5
neural progenitor cell
5
pancreatic delta cell
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CyT49
4
HUES8
4
aorta
4
cardiac muscle cell
4
cardiomyocytes (cardiac muscle cell)
4
caudate nucleus
4
chorionic villus
4
foreskin keratinocyte
4
iPSC derived cell line
4
keratinocyte
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic ductal cell
4
retina
4
right atrium auricular region
4
tibial artery
3
CD4-positive, alpha-beta T cell
3
CD4-positive, alpha-beta memory T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
ascending aorta
3
astrocyte
3
basal cell
3
breast epithelium
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endocrine pancreas
3
endometrium adenocarcinoma
3
enterocyte
3
esophagus
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
frontal cortex
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
monocyte
3
myofibroblast cell
3
neurosphere
3
pancreatic A cell
3
regulatory T cell
3
right renal cortex interstitium
3
right renal pelvis
3
skin fibroblast
3
testis
3
thoracic aorta
3
trophoblast
3
type B pancreatic cell
3
type II pneumocyte
3
upper lobe of left lung
2
cardiac fibroblast
2
muscle of leg
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
EndoC_BH1
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MIN6
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
Schwann cell
2
T-cell
2
T-helper 1 cell
2
T-helper 2 cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
2
bipolar neuron
2
blood vessel smooth muscle cell
2
cardiac precursors (cardiac muscle cell)
2
cerebellum
2
chorion membrane
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythroblast
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
fibroblast of dermis
2
fibroblast of lung
2
gabaergic neuron
2
globus pallidus
2
glomerular visceral epithelial cell
2
glutamatergic neuron
2
goblet cell
2
hepatic stellate cell
2
iPS DF 19.11
2
islet of Langerhans
2
kidney capillary endothelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
mast cell
2
medulla oblongata
2
megakaryocyte
2
memory B cell
Organ
6
connective tissue
Life stage
1
adult
unknown
Date released
4
May, 2021
1
February, 2024
1
September, 2022
Software used
4
abc
1
deltasvm
1
r
Lab
4
Jesse Engreitz, Stanford University
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
6
AMP
RFA
6
AMP
biosample_term_name!
GM12878
fibroblast
relevant_life_stage!
unknown
Showing 6 of 6 results
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Download
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP