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Citing CMDGA
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Annotation type
2
accessible chromatin
2
binding sites
2
candidate regulatory elements
1
chromatin state
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
Target gene links
Annotation type Category
2
DNase-seq
1
ChIP-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
17
brain
14
thymus
10
pituitary stalk
4
caudate nucleus
3
SK-N-SH
3
frontal cortex
3
layer of hippocampus
2
cardiac fibroblast
2
Ammon's horn
2
Brodmann (1909) area 46
2
SK-N-DZ
2
angular gyrus
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
cerebellum
2
choroid plexus epithelial cell
2
cingulate gyrus
2
globus pallidus
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
pons
2
putamen
2
substantia nigra
2
temporal lobe
1
brain microvascular endothelial cell
1
A172
1
BE(2)-C
1
Daoy
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
H54
1
M059J
1
SK-N-MC
1
brain microvascular endothelial cell
1
brain pericyte
1
cerebellar cortex
1
cerebellum (Hemisphere)
1
dorsolateral prefrontal cortex
1
inferior parietal cortex
1
medulloblastoma
1
undifferentiated ESC (H9 cell line)
Organ
2
brain
2
epithelium
2
vasculature
0
thymus
0
trachea
Life stage
1
unknown
Date released
1
May, 2020
1
September, 2022
Software used
1
deltasvm
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR805XSG
released
Annotation file set
: Target gene predictions for BSS00218 choroid plexus epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR492TXW
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain choroid plexus cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP