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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
3
candidate regulatory elements
3
chromatin state
3
target gene predictions
2
gene expression
2
variant allelic effects
1
binding sites
1
histone modifications
Annotation Category
3
Target gene links
2
Genetic variant effects
Annotation type Category
4
DNase-seq
2
ChIP-seq
1
HiC
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
55
HeLa-S3
38
H1-hESC
23
K562
19
A549
19
CD14-positive monocyte
19
HFFc6
14
common myeloid progenitor, CD34-positive
10
B cell
10
fibroblast
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
pituitary stalk
9
CD4-positive, alpha-beta memory T cell
9
adipose tissue
9
adrenal gland
9
endothelial cell
8
GM12878
8
liver
8
psoas muscle
8
smooth muscle cell
8
stomach
7
CD8-positive, alpha-beta memory T cell
7
H9
7
adipocyte
7
heart left ventricle
7
lymphocyte
7
macrophage
7
sigmoid colon
7
spleen
6
MCF-7
6
T cell
6
body of pancreas
6
dendritic cell
6
keratinocyte
6
mononuclear cell
6
olfactory receptor cell
6
pancreas
5
CD8-positive, alpha-beta T cell
5
coronary artery
5
endothelial cell of umbilical vein
5
heart
5
heart right ventricle
5
hepatocyte
5
mammary gland epithelial cell
5
natural killer cell
5
ovary
5
pancreatic delta cell
5
small intestine
5
thyroid gland
5
transverse colon
4
CyT49
4
HUES8
4
aorta
4
astrocyte
4
cardiomyocytes (cardiac muscle cell)
4
caudate nucleus
4
colon epithelial cell
4
endocrine pancreas
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
iPSC derived cell line
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic ductal cell
4
regulatory T cell
4
right atrium auricular region
4
skeletal muscle myoblast
4
thymus
3
CD4-positive, alpha-beta T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
basal cell
3
breast epithelium
3
cardiac muscle cell
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
esophagus
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
frontal cortex
3
immortal human breast epithelial cell line cell
3
kidney
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
lung
3
mesenchymal stem cell
3
monocyte
3
myofibroblast cell
3
naive T cell
3
neutrophil
3
pancreatic A cell
3
skeletal muscle tissue
3
thoracic aorta
3
type B pancreatic cell
3
type II pneumocyte
3
upper lobe of left lung
2
cardiac fibroblast
2
22Rv1
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
EndoC_BH1
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
HAP-1
2
HT-29
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MIN6
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
Schwann cell
2
T-cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
bipolar neuron
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac precursors (cardiac muscle cell)
2
cerebellum
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
enteric smooth muscle cell
2
epithelial cell of proximal tubule
2
erythroblast
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
fibroblast of breast
2
gabaergic neuron
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
glutamatergic neuron
2
goblet cell
2
hepatic stellate cell
2
iPS DF 19.11
2
islet of Langerhans
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
lymphocyte of B lineage (iPSC)
2
mast cell
2
medulla oblongata
2
megakaryocyte
2
memory B cell
2
mesendoderm
2
mesothelial cell
2
midbrain
2
middle frontal gyrus
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
occipital lobe
2
omental fat pad
2
osteoblast
2
pancreatic polypeptide-secreting cell
2
parathyroid adenoma
2
parietal cell
2
peptic cell
2
pons
2
prostate gland
2
putamen
Organ
5
heart
Life stage
embryonic
2
fetal
1
adult
1
child
Date released
2
May, 2020
2
September, 2022
1
March, 2020
Software used
2
deltasvm
2
r
1
hiccups
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
limb
relevant_life_stage!
embryonic
Showing 5 of 5 results
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Download
FileSet
DSR239BWO
released
Annotation file set
: Target gene predictions for BSS00516 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR144ZJD
released
Annotation file set
: Target gene predictions for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR480PRT
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart child DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR799HGW
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR771SNY
released
Annotation file set
: A target gene prediction annotation in heart of DSR786VPZ Hi-C
Lab:
AMP-T2D consortium
Project:
AMP