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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
86
histone modifications
23
accessible chromatin
18
gene expression
7
target gene predictions
4
eQTL
3
differential activity
2
hQTL
1
binding sites
1
meQTL
1
sQTL
1
variant allelic effects
Annotation Category
7
Target gene links
1
Genetic variant effects
Annotation type Category
5
snATAC-seq
2
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
2
bigBed narrowPeak
2
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
cell line
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
22
heart
21
stomach
19
A549
19
CD14-positive monocyte
19
HFFc6
17
adrenal gland
17
brain
17
lung
17
muscle of arm
17
small intestine
15
kidney
15
placenta
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
B cell
12
fibroblast
11
endothelial cell
11
pericyte cell
11
right kidney
11
right lung
10
hematopoietic multipotent progenitor cell
10
liver
10
pituitary stalk
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
adipose tissue
9
heart left ventricle
9
left kidney
9
macrophage
9
smooth muscle cell
8
GM12878
8
H9
8
adipocyte
8
psoas muscle
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
hepatocyte
7
lymphocyte
7
natural killer cell
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
T cell
6
body of pancreas
6
dendritic cell
6
heart right ventricle
6
keratinocyte
6
mononuclear cell
6
olfactory receptor cell
6
ovary
6
pancreas
5
CD8-positive, alpha-beta T cell
5
coronary artery
5
endothelial cell of umbilical vein
5
gastrocnemius medialis
5
mammary gland epithelial cell
5
muscle of trunk
5
neural progenitor cell
5
pancreatic delta cell
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CyT49
4
HUES8
4
aorta
4
astrocyte
4
cardiac muscle cell
4
cardiomyocytes (cardiac muscle cell)
4
caudate nucleus
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
iPSC derived cell line
4
mast cell
4
mesenchymal stem cell
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic ductal cell
4
regulatory T cell
retina
4
right atrium auricular region
4
skeletal muscle myoblast
4
tibial artery
3
CD4-positive, alpha-beta T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
basal cell
3
breast epithelium
3
chorion membrane
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
esophagus
3
foreskin fibroblast
3
frontal cortex
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
monocyte
3
myofibroblast cell
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
skin fibroblast
3
testis
3
thoracic aorta
3
trophoblast
3
type B pancreatic cell
3
type II pneumocyte
3
upper lobe of left lung
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
EndoC_BH1
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MIN6
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
Schwann cell
2
T-cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
bipolar neuron
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac precursors (cardiac muscle cell)
2
cerebellum
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endocardial cell
2
endodermal cell
2
enteric smooth muscle cell
2
epithelial cell of proximal tubule
2
erythroblast
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
Organ
5
epithelium
5
pancreas
Life stage
2
adult
Date released
3
January, 2021
1
February, 2024
1
May, 2020
1
May, 2021
1
November, 2021
1
September, 2022
Software used
4
cicero
2
abc
1
chicago
1
deltasvm
Lab
5
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
4
AMP
3
T1D
1
ENCODE
RFA
4
AMP
3
T1D
1
ENCODE3
biosample_term_name!
renal cortex interstitium
retina
Showing 8 of 8 results
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Download
FileSet
DSR803ULZ
released
Annotation file set
: Target gene predictions of Pancreatic Delta,Gamma cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR078DAN
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSTlow_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR092ALL
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSThigh_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR236XNZ
released
Annotation file set
: pancreatic delta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR964IEU
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic delta cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP