Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
4
eQTL
4
target gene predictions
3
gene expression
3
histone modifications
2
binding sites
2
candidate regulatory elements
1
caQTL
1
chromatin state
Annotation Category
4
Target gene links
Annotation type Category
3
DNase-seq
ATAC-seq
2
H3K27ac ChIP-Seq
2
pCHi-C
1
ChIP-seq
1
snATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
2
primary cell
1
in vitro differentiated cells
1
stem cell
Biosample term
51
HeLa-S3
38
H1-hESC
19
HFFc6
19
heart
16
K562
16
brain
16
lung
16
muscle of arm
14
placenta
14
small intestine
14
stomach
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
13
thymus
12
kidney
11
right lung
10
right kidney
9
adrenal gland
9
left kidney
9
renal cortex interstitium
9
renal pelvis
7
H9
7
lymphocyte
7
spinal cord
6
CD4-positive, alpha-beta memory T cell
6
GM12878
6
olfactory receptor cell
5
neural progenitor cell
5
trophoblast cell
4
CyT49
4
HUES8
4
chorionic villus
4
foreskin keratinocyte
4
heart left ventricle
4
iPSC derived cell line
4
muscle of trunk
3
B cell
3
T-helper 17 cell
3
chorion membrane
3
common myeloid progenitor, CD34-positive
3
endothelial cell of umbilical vein
3
heart right ventricle
3
liver
3
neurosphere
3
neutrophil
3
psoas muscle
3
retina
3
spleen
3
trophoblast
2
22Rv1
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
CD8-positive, alpha-beta memory T cell
2
GM18507
2
HCT116
2
HepG2
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
activated CD4-positive, alpha-beta T cell
2
bronchial epithelial cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
epithelial cell of prostate
2
eye
2
fibroblast of cardiac tissue
2
fibroblast of dermis
2
fibroblast of lung
2
foreskin fibroblast
2
hepatocyte
2
keratinocyte
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
macrophage
2
megakaryocyte
2
mesenchymal stem cell
2
mesendoderm
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
ovary
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic delta cell
2
regulatory T cell
2
right renal cortex interstitium
2
right renal pelvis
2
sigmoid colon
2
skin fibroblast
tongue
1
A673
1
AG04449 cell
1
AG04450 cell
1
Ammon's horn
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
CD14-positive monocyte
1
CD1c-positive myeloid dendritic cell
1
CMK
1
CWRU1
1
DND-41
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
EndoC_BH1
1
G401
1
GM03348
1
GM06990
1
GM08714
1
GM12864
1
GM12865
1
GM12891
1
GM12892
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
H7-hESC
1
HEK293
1
HEK293T
1
HK-2 cell
1
HTR-8/Svneo
1
HUES48
1
HUES6
1
HUES64
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KOPT-K1
1
L1-S8
1
L1-S8R
1
MG63
1
NCI-H460 cell
1
NT2-D1 cell
1
PC-9
1
Panc1
1
SJCRH30
1
SK-N-MC
1
T cell
1
T-helper 1 cell
1
T-helper 2 cell
1
UCSF-4
1
WERI-Rb-1
1
WI38
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
adipose tissue
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
amnion
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
aorta
1
arm bone
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
bladder (urinary bladder)
1
brain microvascular endothelial cell
1
cardiac mesoderm primordium
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
choroid plexus epithelial cell
1
colon carcinoma
1
colon epithelial cell
1
conventional dendritic cell
1
dermis blood vessel endothelial cell
1
dorsolateral prefrontal cortex
1
ectodermal cell
1
embryonic facial prominence
1
embryonic stem cell
1
endocrine pancreas
1
endothelial cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
epithelial cell of proximal tubule
1
erythroblast
1
esophagus
1
femur
Organ
2
connective tissue
Life stage
adult
1
embryonic
Date released
1
January, 2021
1
March, 2020
1
May, 2020
1
September, 2022
Software used
1
chicago
1
cicero
1
nospecificsoft_customcode
1
r
Lab
3
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
3
AMP
1
T1D
RFA
3
AMP
1
T1D
annotation_type_category!
ATAC-seq
biosample_term_name!
tongue
relevant_life_stage!
adult
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP