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Schema
Citing CMDGA
Clear Filters
Annotation type
38
accessible chromatin
37
gene expression
18
differential activity
16
variant allelic effects
9
Fine-mapped variants
8
target gene predictions
7
eQTL
3
caQTL
Annotation Category
8
Target gene links
Annotation type Category
32
DNase-seq
ChIP-seq
6
ATAC-seq
4
H3K27ac ChIP-Seq
2
HiC
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
5
primary cell
3
tissue
Biosample term
2
endothelial cell of umbilical vein
1
aorta
1
coronary artery
1
endothelial cell of lymphatic vessel
1
smooth muscle cell of the coronary artery
1
thyroid follicular cell
1
thyroid gland
Organ
74
epithelium
56
embryo
54
uterus
35
connective tissue
32
blood
32
bodily fluid
29
pancreas
16
intestine
14
brain
11
musculature of body
10
heart
10
large intestine
10
pituitary gland
10
skin of body
7
lung
6
adrenal gland
6
stomach
6
vasculature
5
blood vessel
5
liver
5
mammary gland
3
adipose tissue
3
extraembryonic component
3
limb
3
small intestine
2
artery
2
esophagus
2
gonad
2
ovary
2
prostate gland
2
thyroid gland
2
vein
1
bone element
1
bone marrow
1
breast
1
bronchus
1
lymph node
1
lymphatic vessel
1
lymphoid tissue
1
penis
1
placenta
1
spinal cord
1
spleen
1
thymus
Life stage
1
adult
Date released
4
May, 2021
2
March, 2020
2
November, 2021
Software used
6
abc
2
hiccups
Lab
4
Jesse Engreitz, Stanford University
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
6
AMP
2
ENCODE
RFA
6
AMP
2
ENCODE3
annotation_type_category!
ChIP-seq
pCHi-C
Showing 8 of 8 results
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Download
FileSet
DSR451QZS
released
Annotation file set
: Target gene predictions of Lymphatic Endothelial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR121IWB
released
Annotation file set
: Target gene predictions of Thyroid Follicular Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR632XJX
released
Annotation file set
: enhancer-gene predicton of thyroid_gland-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR784TGC
released
Annotation file set
: enhancer-gene predicton of endothelial_cell_of_umbilical_vein-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR233ZIX
released
Annotation file set
: enhancer-gene predicton of coronary_artery-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR049KAF
released
Annotation file set
: A target gene prediction annotation in endothelial cell of umbilical vein of DSR430XOJ Hi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR428FCH
released
Annotation file set
: A target gene prediction annotation in aorta of DSR073ZJB Hi-C
Lab:
AMP-T2D consortium
Project:
AMP