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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
2
target gene predictions
Annotation Category
2
Target gene links
Annotation type Category
3
DNase-seq
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
stem cell
Biosample term
52
HeLa-S3
38
H1-hESC
19
HFFc6
17
K562
15
CD14-positive monocyte
10
pituitary stalk
7
GM12878
7
H9
6
dendritic cell
6
lymphocyte
6
olfactory receptor cell
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
adipocyte
4
iPSC derived cell line
4
psoas muscle
3
adrenal gland
3
cardiomyocytes (cardiac muscle cell)
3
liver
3
macrophage
3
monocyte
3
pancreas
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
thymus
2
B cell
2
BJAB cell
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
HCT116
2
HepG2
2
Jurkat
2
MCF 10A cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
adipose tissue
2
aorta
2
endothelial cell of umbilical vein
2
erythroblast
2
heart left ventricle
2
heart right ventricle
2
lymphocyte of B lineage (iPSC)
2
megakaryocyte
2
mesenchymal stem cell
2
mesendoderm
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
ovary
2
pancreatic acinar cell
2
pancreatic ductal cell
2
sigmoid colon
2
small intestine
2
spleen
2
stomach
trophoblast cell
1
A549
1
A673
1
Ammon's horn
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
EndoC_BH1
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
H7-hESC
1
HAP-1
1
HCT-116 cell
1
HT-29
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
astrocyte
1
beige adipocyte
1
bipolar neuron
1
bladder (urinary bladder)
1
body of pancreas
1
breast epithelium
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiac ventricle
1
cell
1
common myeloid progenitor, CD34-positive
1
conventional dendritic cell
1
coronary artery
1
dorsolateral prefrontal cortex
1
embryonic stem cell
1
endothelial cell
1
epithelial cell of prostate
1
esophagus
1
fibroblast cell line
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gastric (mucosa of stomach)
1
gastrocnemius medialis
1
heart
1
hepatocyte
1
iPS DF 19.11
1
induced pluripotent stem cell
1
inflammatory macrophage
1
islet of Langerhans
1
keratinocyte
1
large intestine
1
lung
1
mammary epithelial cell
1
megakaryocyte-erythroid progenitor cell
1
memory B cell
1
muscle of leg
1
muscle of trunk
1
myotube
1
natural killer cell mediated cytotoxicity
1
neural progenitor cell
1
neuronal stem cell
1
neutrophil
1
non-classical monocyte
1
osteoblast
1
pancreatic A cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
placenta
1
plasmacytoid dendritic cell
1
regulatory T cell
1
right cardiac atrium
1
skeletal muscle myoblast
1
smooth muscle cell of the coronary artery
1
spinal cord
1
stellate neuron
1
thyroid gland
1
transverse colon
1
trophoblast
1
type B pancreatic cell
1
undifferentiated ESC (H9 cell line)
1
uterus
1
white adipose cell
1
white adipose tissue
Date released
1
March, 2020
1
May, 2021
Software used
1
abc
1
nospecificsoft_customcode
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
2
AMP
RFA
ENCODE3
2
AMP
annotation_type_category!
ChIP-seq
award.rfa!
ENCODE3
biosample_term_name!
trophoblast cell
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP