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Schema
Citing CMDGA
Clear Filters
Annotation type
22
accessible chromatin
17
gene expression
13
eQTL
7
target gene predictions
6
Fine-mapped variants
3
variant allelic effects
2
differential activity
Annotation Category
7
Target gene links
Annotation type Category
25
DNase-seq
ChIP-seq
3
ATAC-seq
3
H3K27ac ChIP-Seq
3
pCHi-C
1
snATAC-seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
4
tissue
2
primary cell
1
in vitro differentiated cells
Biosample term
2
adipose tissue
2
megakaryocyte
1
beige adipocyte
1
white adipose cell
1
white adipose tissue
Organ
74
epithelium
57
embryo
54
uterus
38
connective tissue
32
blood
32
bodily fluid
31
pancreas
18
intestine
16
brain
13
heart
12
musculature of body
11
large intestine
10
pituitary gland
10
skin of body
8
lung
7
adrenal gland
7
liver
7
stomach
7
vasculature
6
blood vessel
5
adipose tissue
5
mammary gland
4
small intestine
3
esophagus
3
extraembryonic component
3
gonad
3
limb
3
ovary
3
thymus
2
artery
2
bone element
2
bone marrow
2
prostate gland
2
spleen
2
thyroid gland
2
vein
1
breast
1
bronchus
1
lymph node
1
lymphatic vessel
1
lymphoid tissue
1
penis
1
placenta
1
spinal cord
1
urinary bladder
Date released
3
May, 2021
2
March, 2020
1
January, 2021
1
May, 2020
Software used
3
abc
2
chicago
1
cicero
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
3
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
6
AMP
1
T1D
RFA
6
AMP
1
T1D
annotation_type_category!
ChIP-seq
biosample_term_name!
KARPAS-422 cell
Showing 7 of 7 results
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Download
FileSet
DSR719JYF
released
Annotation file set
: enhancer-gene predicton of white_adipose-Loft2014 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR405NVR
released
Annotation file set
: enhancer-gene predicton of brite_adipose-Loft2014 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR255DSD
released
Annotation file set
: enhancer-gene predicton of adipose_tissue-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR345BXM
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of megakaryocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR992TVD
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of megakaryocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR355DOK
released
Annotation file set
: A target gene prediction annotation in white adipose cell of TSTSR423QSN pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR788UJU
released
Annotation file set
: A target gene prediction annotation in Human Fat of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP