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Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
target gene predictions
3
eQTL
2
gene expression
2
variant allelic effects
Annotation Category
6
Target gene links
Annotation type Category
19
DNase-seq
ChIP-seq
3
ATAC-seq
3
pCHi-C
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
4
tissue
2
primary cell
Biosample term
3
thymus
2
smooth muscle cell of the esophagus
1
esophagus
Organ
74
epithelium
57
embryo
54
uterus
38
connective tissue
32
blood
32
bodily fluid
31
pancreas
18
intestine
16
brain
13
heart
12
musculature of body
11
large intestine
10
pituitary gland
10
skin of body
8
lung
7
adrenal gland
7
liver
7
stomach
7
vasculature
6
blood vessel
adipose tissue
5
mammary gland
4
small intestine
3
esophagus
3
extraembryonic component
3
gonad
3
limb
3
ovary
3
thymus
2
artery
2
bone element
2
bone marrow
2
prostate gland
2
spleen
2
thyroid gland
2
vein
1
breast
1
bronchus
1
lymph node
1
lymphatic vessel
1
lymphoid tissue
1
penis
1
placenta
1
spinal cord
1
urinary bladder
Date released
2
March, 2020
2
November, 2021
1
May, 2020
1
May, 2021
Software used
3
abc
2
nospecificsoft_customcode
1
chicago
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
4
AMP
2
ENCODE
RFA
4
AMP
2
ENCODE3
annotation_type_category!
ChIP-seq
organ_slims!
adipose tissue
Showing 6 of 6 results
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Download
FileSet
DSR738CKV
released
Annotation file set
: Target gene predictions of Smooth Muscle (Esophageal Muscularis) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR513MXE
released
Annotation file set
: Target gene predictions of Smooth Muscle (Esophageal Muscularis) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR118ZZL
released
Annotation file set
: enhancer-gene predicton of thymus_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR149GJC
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of thymus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625WQC
released
Annotation file set
: A target gene prediction annotation in Human Thymus of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR172XCI
released
Annotation file set
: A target gene prediction annotation in Human Esophagus of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP