Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
4
accessible chromatin
3
gene expression
2
target gene predictions
1
chromatin state
Annotation Category
2
Target gene links
Annotation type Category
3
ATAC-seq
DNase-seq
2
H3K27ac ChIP-Seq
pCHi-C
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
51
HeLa-S3
37
H1-hESC
19
HFFc6
16
K562
9
pericyte cell
7
endothelial cell
6
GM12878
6
H9
6
lymphocyte
6
olfactory receptor cell
6
smooth muscle cell
4
CyT49
4
HUES8
4
fibroblast
4
iPSC derived cell line
4
pancreatic delta cell
3
colon epithelial cell
3
pancreatic alpha cell
3
pancreatic beta cell
2
CD8-positive, alpha-beta T cell
2
HCT116
2
astrocyte
2
blood vessel smooth muscle cell
2
cardiomyocytes (cardiac muscle cell)
2
cortical cell of adrenal gland
2
enteric smooth muscle cell
2
gabaergic neuron
2
glutamatergic neuron
2
keratinocyte
2
luminal epithelial cell of mammary gland
2
macrophage
2
memory B cell
2
naive B cell
2
pancreatic A cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
psoas muscle
2
smooth muscle cell of the esophagus
2
type B pancreatic cell
2
type II pneumocyte
1
CD4-positive, alpha-beta T cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
EndoC_BH1
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alveolar macrophage
1
aorta
1
basal cell
1
basal cell of epidermis
1
cardiac endothelial cell
1
cardiac precursors (cardiac muscle cell)
1
cell
1
ciliated cell
1
club cell
1
colon goblet cell
1
conventional dendritic cell
1
eccrine cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
endothelial cell of umbilical vein
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
fat cell
1
fibroblast of cardiac tissue
1
foveolar cell of stomach
1
granular cell of epidermis
1
heart
1
heart left ventricle
1
heart right ventricle
1
hepatocyte
1
intestinal tuft cell
1
liver
1
luteal cell
1
lymphocyte of B lineage (iPSC)
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
megakaryocyte
1
melanocyte
1
mesothelial cell
1
microglial cell
1
monocyte
1
myoepithelial cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
natural killer cell mediated cytotoxicity
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
oligodendrocyte
1
oligodendrocyte precursor cell
1
pancreas
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
paneth cell
1
parietal cell
1
peptic cell
1
plasma cell
1
plasmacytoid dendritic cell
1
regular atrial cardiac myocyte
1
regulatory T cell
1
respiratory goblet cell
1
schwann cell
1
skeletal muscle fibroblast
1
skeletal muscle satellite cell
1
skin fibroblast
1
small intestine goblet cell
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
thyroid follicular cell
1
type I cell of adrenal cortex
1
type I muscle cell
1
type I pneumocyte
1
type II cell of adrenal cortex
1
type II muscle cell
1
undifferentiated ESC (H9 cell line)
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Date released
1
January, 2021
1
November, 2021
Software used
1
abc
1
cicero
Lab
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
1
ENCODE
1
T1D
RFA
1
ENCODE3
1
T1D
annotation_type_category!
DNase-seq
pCHi-C
biosample_term_name!
Panc1
small intestine
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D