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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
8
chromatin state
6
accessible chromatin
5
binding sites
4
candidate regulatory elements
4
target gene predictions
3
histone modifications
1
gene expression
Annotation Category
4
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
HiC
pCHi-C
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
21
stomach
20
heart
19
A549
19
CD14-positive monocyte
19
HFFc6
16
adrenal gland
16
brain
16
lung
16
muscle of arm
16
small intestine
15
placenta
14
common myeloid progenitor, CD34-positive
14
kidney
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
12
thymus
11
right lung
10
hematopoietic multipotent progenitor cell
10
pituitary stalk
10
right kidney
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
liver
9
renal cortex interstitium
9
renal pelvis
8
GM12878
8
H9
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
adipose tissue
7
lymphocyte
7
psoas muscle
7
spleen
7
trophoblast cell
6
MCF-7
6
adipocyte
6
dendritic cell
6
heart left ventricle
6
mononuclear cell
6
olfactory receptor cell
6
sigmoid colon
5
body of pancreas
5
gastrocnemius medialis
5
muscle of trunk
5
ovary
5
thyroid gland
5
transverse colon
4
CyT49
4
HUES8
4
T cell
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
heart right ventricle
4
iPSC derived cell line
4
natural killer cell
4
neural progenitor cell
4
pancreas
3
HCT116
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
aorta
3
breast epithelium
3
caudate nucleus
3
chorion membrane
3
coronary artery
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
layer of hippocampus
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
naive T cell
3
neurosphere
3
regulatory T cell
3
retina
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
testis
3
tibial nerve
3
upper lobe of left lung
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
HepG2
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
T47D
2
THP-1
2
U937
2
angular gyrus
2
ascending aorta
2
astrocyte
2
bipolar neuron
2
bronchial epithelial cell
2
cardiac muscle cell
2
cardiomyocytes (cardiac muscle cell)
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
frontal cortex
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
mesendoderm
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neutrophil
2
omental fat pad
2
osteoblast
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
skin fibroblast
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
thoracic aorta
2
tibial artery
2
tongue
2
trophoblast
2
urinary bladder
2
uterus
2
vagina
1
8988T
1
A172
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
Ammon's horn
1
B cell, CD19-positive
1
BE(2)-C
1
BJ cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD56-positive, CD161-positive immature natural killer cell
1
CMK
1
COLO829
1
CWRU1
Disease term
2
breast ductal adenocarcinoma
Organ
2
blood
2
bodily fluid
2
mammary gland
Life stage
3
adult
Date released
3
September, 2022
1
February, 2024
Software used
3
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
pCHi-C
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR353VNN
released
Annotation file set
: Target gene predictions from Hi-C on lympoblastoid cell lines from 1000G individuals. GM19240
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR933LKX
released
Annotation file set
: Target gene predictions for BSS01705 T47D from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838SVH
released
Annotation file set
: Target gene predictions for BSS01699 T47D from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR140ZDV
released
Annotation file set
: Target gene predictions for BSS00473 GM19240 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP