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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
9
accessible chromatin
8
target gene predictions
5
gene expression
4
chromatin state
3
differential activity
2
candidate regulatory elements
2
variant allelic effects
1
binding sites
1
histone modifications
Annotation Category
8
Target gene links
Annotation type Category
5
DNase-seq
4
ATAC-seq
4
H3K27ac ChIP-Seq
3
snATAC-seq
1
ChIP-seq
Available data
8
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
8
released
Genome assembly (visualization)
10
hg19
GRCh38
Organism
8
Homo sapiens
Biosample type
5
in vitro differentiated cells
3
primary cell
Biosample term
21
stomach
20
heart
19
A549
18
CD14-positive monocyte
17
adrenal gland
17
lung
17
small intestine
16
brain
16
muscle of arm
15
placenta
14
kidney
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
11
common myeloid progenitor, CD34-positive
11
right lung
10
liver
10
pituitary stalk
10
right kidney
9
hematopoietic multipotent progenitor cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
B cell
8
adipose tissue
8
psoas muscle
8
spinal cord
8
spleen
7
K562
7
heart left ventricle
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
dendritic cell
6
ovary
5
CD8-positive, alpha-beta memory T cell
5
adipocyte
5
body of pancreas
5
gastrocnemius medialis
5
heart right ventricle
5
mononuclear cell
5
muscle of trunk
5
natural killer cell
5
neural progenitor cell
5
pancreas
5
thyroid gland
5
transverse colon
4
CD8-positive, alpha-beta T cell
4
HeLa-S3
4
aorta
4
chorionic villus
4
endothelial cell of umbilical vein
4
foreskin keratinocyte
4
mesenchymal stem cell
3
CD4-positive, alpha-beta memory T cell
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
T cell
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
coronary artery
3
endocrine pancreas
3
endometrium adenocarcinoma
3
esophagus
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
macrophage
3
mesendoderm
3
monocyte
3
neurosphere
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
regulatory T cell
3
retina
3
testis
3
tibial nerve
3
trophoblast
3
upper lobe of left lung
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
GM12878
2
H1-hESC
2
H7-hESC
2
H9
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
SK-N-DZ
2
T-cell
2
T-helper 1 cell
2
T-helper 2 cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
2
ascending aorta
2
bipolar neuron
2
cardiac muscle cell
2
cerebellum
2
chorion membrane
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
erythroblast
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
fibroblast of cardiac tissue
2
fibroblast of dermis
2
fibroblast of lung
2
frontal cortex
2
hepatocyte
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
mammary gland epithelial cell
2
megakaryocyte
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
omental fat pad
2
pancreatic acinar cell
2
pancreatic ductal cell
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right cardiac atrium
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle myoblast
2
skeletal muscle tissue
2
skin fibroblast
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
thoracic aorta
2
tibial artery
2
tongue
2
urinary bladder
2
uterus
2
vagina
1
8988T
1
A172
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
C4-2B
1
CD56-positive, CD161-positive immature natural killer cell
1
CMK
1
COLO829
1
Caco-2 cell
1
Caki2
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
Organ
5
connective tissue
3
epithelium
3
pancreas
Life stage
2
adult
unknown
Date released
4
May, 2021
2
January, 2021
1
February, 2021
1
September, 2022
Software used
4
abc
3
cicero
1
r
Lab
4
Jesse Engreitz, Stanford University
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
6
AMP
2
T1D
RFA
6
AMP
2
T1D
assembly!
GRCh38
relevant_life_stage!
unknown
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746SVT
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of GCGlow_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR998IGH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of GCGhigh_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR014OEB
released
Annotation file set
: pancreatic alpha cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP