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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
34
histone modifications
16
gene expression
11
accessible chromatin
8
candidate regulatory elements
6
target gene predictions
2
chromatin state
2
variant allelic effects
1
binding sites
Annotation Category
6
Target gene links
Annotation type Category
4
DNase-seq
3
ATAC-seq
3
H3K27ac ChIP-Seq
1
ChIP-seq
1
pCHi-C
1
snATAC-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
in vitro differentiated cells
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
21
stomach
20
heart
19
A549
19
HFFc6
18
CD14-positive monocyte
17
adrenal gland
17
lung
17
small intestine
16
brain
16
muscle of arm
15
placenta
14
kidney
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
11
common myeloid progenitor, CD34-positive
11
right lung
10
liver
10
pituitary stalk
10
right kidney
9
hematopoietic multipotent progenitor cell
9
left kidney
renal cortex interstitium
9
renal pelvis
8
B cell
8
GM12878
8
H9
8
adipose tissue
8
psoas muscle
8
spinal cord
8
spleen
7
heart left ventricle
7
lymphocyte
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
dendritic cell
6
olfactory receptor cell
6
ovary
5
CD8-positive, alpha-beta memory T cell
5
adipocyte
5
body of pancreas
5
gastrocnemius medialis
5
heart right ventricle
5
mononuclear cell
5
muscle of trunk
5
natural killer cell
5
neural progenitor cell
5
pancreas
5
thyroid gland
5
transverse colon
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
aorta
4
chorionic villus
4
endothelial cell of umbilical vein
4
foreskin keratinocyte
4
iPSC derived cell line
4
mesenchymal stem cell
3
CD4-positive, alpha-beta memory T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
T cell
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
coronary artery
3
endocrine pancreas
3
endometrium adenocarcinoma
3
esophagus
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
macrophage
3
mesendoderm
3
monocyte
3
neurosphere
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
regulatory T cell
3
retina
3
testis
3
tibial nerve
3
trophoblast
3
upper lobe of left lung
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
SK-N-DZ
2
T-cell
2
T-helper 1 cell
2
T-helper 2 cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
2
ascending aorta
2
bipolar neuron
2
cardiac muscle cell
2
cerebellum
2
chorion membrane
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
erythroblast
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
fibroblast of cardiac tissue
2
fibroblast of dermis
2
fibroblast of lung
2
frontal cortex
2
hepatocyte
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
mammary gland epithelial cell
2
megakaryocyte
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
omental fat pad
2
pancreatic acinar cell
2
pancreatic ductal cell
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right cardiac atrium
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle myoblast
2
skeletal muscle tissue
2
skin fibroblast
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
thoracic aorta
2
tibial artery
2
tongue
2
urinary bladder
2
uterus
2
vagina
1
8988T
1
A172
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
Organ
2
epithelium
2
liver
Life stage
1
embryonic
unknown
Date released
3
May, 2021
1
January, 2021
1
May, 2020
1
September, 2022
Software used
3
abc
1
chicago
1
cicero
1
r
Lab
3
Jesse Engreitz, Stanford University
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
5
AMP
ENCODE
1
T1D
RFA
5
AMP
1
T1D
award.project!
ENCODE
biosample_term_name!
renal cortex interstitium
relevant_life_stage!
unknown
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR926ULW
released
Annotation file set
: Target gene predictions for BSS00556 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR604IOP
released
Annotation file set
: enhancer-gene predicton of hepatocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP