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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
3
target gene predictions
2
differential activity
Annotation Category
3
Target gene links
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
9
pericyte cell
7
endothelial cell
6
smooth muscle cell
4
fibroblast
3
colon epithelial cell
3
pancreatic delta cell
2
CD8-positive, alpha-beta T cell
2
astrocyte
2
blood vessel smooth muscle cell
2
cortical cell of adrenal gland
2
enteric smooth muscle cell
2
gabaergic neuron
2
glutamatergic neuron
2
keratinocyte
2
luminal epithelial cell of mammary gland
2
macrophage
2
memory B cell
2
pancreatic A cell
2
pancreatic acinar cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic ductal cell
2
smooth muscle cell of the esophagus
2
type B pancreatic cell
2
type II pneumocyte
1
CD4-positive, alpha-beta T cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
basal cell
1
basal cell of epidermis
1
cardiac endothelial cell
1
ciliated cell
1
club cell
1
colon goblet cell
1
conventional dendritic cell
1
eccrine cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
fat cell
1
fibroblast of cardiac tissue
1
foveolar cell of stomach
1
granular cell of epidermis
1
hepatocyte
1
intestinal tuft cell
1
luteal cell
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
megakaryocyte
1
melanocyte
1
mesothelial cell
1
microglial cell
1
monocyte
1
myoepithelial cell
1
naive B cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
natural killer cell mediated cytotoxicity
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
oligodendrocyte
1
oligodendrocyte precursor cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
paneth cell
1
parietal cell
1
peptic cell
1
plasma cell
1
plasmacytoid dendritic cell
1
regular atrial cardiac myocyte
1
regulatory T cell
1
respiratory goblet cell
1
schwann cell
1
skeletal muscle fibroblast
1
skeletal muscle satellite cell
1
skin fibroblast
1
small intestine goblet cell
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
thyroid follicular cell
1
type I cell of adrenal cortex
1
type I muscle cell
1
type I pneumocyte
1
type II cell of adrenal cortex
1
type II muscle cell
1
undifferentiated ESC (H9 cell line)
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Organ
2
epithelium
2
pancreas
Date released
3
January, 2021
Software used
3
cicero
Lab
3
Kyle Gaulton, UCSD
Project
3
T1D
RFA
AMP
3
T1D
award.rfa!
AMP
Showing 3 of 3 results
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Download
FileSet
DSR166ECC
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of INSlow_beta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR131NAF
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of INShigh_beta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR705YZV
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of activated_CD4_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D