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Schema
Citing CMDGA
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Annotation type
7
accessible chromatin
4
target gene predictions
3
differential activity
3
gene expression
1
candidate regulatory elements
1
chromatin state
1
variant allelic effects
Annotation Category
4
Target gene links
Annotation type Category
3
snATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
4
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Biosample term
5
body of pancreas
5
pancreas
4
endocrine pancreas
4
pancreatic delta cell
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
type B pancreatic cell
2
Panc1
1
8988T
1
EndoC_BH1
1
HPDE6-E6E7
1
islet of Langerhans
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
Disease term
1
pancreatic adenocarcinoma
Organ
4
pancreas
3
epithelium
Life stage
2
adult
Date released
2
January, 2021
1
February, 2021
1
September, 2022
Software used
3
cicero
1
r
Lab
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
2
AMP
2
T1D
RFA
2
AMP
2
T1D
month_released!
August, 2020
organ_slims!
bodily fluid
Showing 4 of 4 results
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Download
FileSet
DSR947SRN
released
Annotation file set
: Target gene predictions for BSS00003 8988T from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746SVT
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of GCGlow_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR998IGH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of GCGhigh_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR014OEB
released
Annotation file set
: pancreatic alpha cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP