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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
19
histone modifications
5
target gene predictions
4
accessible chromatin
2
binding sites
2
gene expression
1
candidate regulatory elements
1
chromatin state
Annotation Category
5
Target gene links
Annotation type Category
2
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
1
HiC
1
pCHi-C
1
snATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
cell line
Biosample term
52
HeLa-S3
39
H1-hESC
19
HFFc6
19
heart
17
K562
16
CD14-positive monocyte
16
brain
16
lung
16
muscle of arm
16
stomach
15
placenta
15
small intestine
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
kidney
11
adrenal gland
11
right lung
10
pituitary stalk
10
right kidney
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
H9
8
spinal cord
7
GM12878
7
lymphocyte
trophoblast cell
6
CD4-positive, alpha-beta memory T cell
6
dendritic cell
6
olfactory receptor cell
5
adipocyte
5
muscle of trunk
5
neural progenitor cell
4
B cell
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
chorionic villus
4
common myeloid progenitor, CD34-positive
4
endothelial cell of umbilical vein
4
foreskin keratinocyte
4
heart left ventricle
4
iPSC derived cell line
4
liver
4
psoas muscle
4
spleen
3
HepG2
3
SK-N-SH
3
T-helper 17 cell
3
chorion membrane
3
epithelial cell of prostate
3
fibroblast of dermis
3
fibroblast of lung
3
foreskin fibroblast
3
heart right ventricle
3
hepatocyte
3
keratinocyte
3
macrophage
3
mesenchymal stem cell
3
mesendoderm
3
monocyte
3
neurosphere
3
neutrophil
3
ovary
3
retina
3
sigmoid colon
3
trophoblast
2
22Rv1
2
A673
2
BJAB cell
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta memory T cell
2
GM18507
2
H7-hESC
2
HCT116
2
IMR-90
2
Jurkat
2
MCF 10A cell
2
NAMALWA cell
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
adipose tissue
2
astrocyte
2
bronchial epithelial cell
2
cardiac muscle cell
2
dermis lymphatic vessel endothelial cell
2
endodermal cell
2
erythroblast
2
eye
2
fibroblast of cardiac tissue
2
iPS DF 19.11
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
megakaryocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
osteoblast
2
pancreas
2
pancreatic acinar cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic delta cell
2
pancreatic ductal cell
2
regulatory T cell
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle myoblast
2
skin fibroblast
2
tongue
1
A549
1
AG04449 cell
1
AG04450 cell
1
Ammon's horn
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD56-positive, CD161-positive immature natural killer cell
1
CMK
1
CWRU1
1
DND-41
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
EndoC_BH1
1
G401
1
GM03348
1
GM06990
1
GM08714
1
GM12864
1
GM12865
1
GM12891
1
GM12892
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
HAP-1
1
HCT-116 cell
1
HEK293
1
HEK293T
1
HK-2 cell
1
HT-29
1
HTR-8/Svneo
1
HUES48
1
HUES6
1
HUES64
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
KARPAS-422 cell
1
KOPT-K1
1
L1-S8
1
L1-S8R
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MG63
1
MM.1S
1
NCCIT cell
1
NCI-H460 cell
1
NT2-D1 cell
1
OCI-LY7
1
SJCRH30
1
SK-N-MC
1
T cell
1
T-helper 1 cell
1
T-helper 2 cell
1
UCSF-4
1
WERI-Rb-1
1
WI38
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
Organ
1
blood
1
bodily fluid
Life stage
adult
Date released
2
May, 2021
1
February, 2024
1
January, 2021
1
May, 2020
Software used
2
abc
1
chicago
1
cicero
Lab
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
4
AMP
1
T1D
RFA
4
AMP
1
T1D
biosample_term_name!
trophoblast cell
lab.title!
Bing Ren, UCSD
relevant_life_stage!
adult
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR658HOF
released
Annotation file set
: Target gene predictions from Hi-C on lympoblastoid cell lines from 1000G individuals. GM19238
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP