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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
8
accessible chromatin
6
chromatin state
5
binding sites
3
histone modifications
2
target gene predictions
1
candidate regulatory elements
Annotation Category
2
Target gene links
Annotation type Category
1
ChIP-seq
1
DNase-seq
1
HiC
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
primary cell
2
cell line
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
21
stomach
20
heart
19
A549
19
HFFc6
16
adrenal gland
16
brain
16
lung
16
muscle of arm
16
small intestine
15
placenta
14
kidney
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
13
thymus
11
right lung
10
hematopoietic multipotent progenitor cell
10
pituitary stalk
10
right kidney
9
left kidney
9
liver
9
renal cortex interstitium
9
renal pelvis
8
GM12878
8
H9
8
spinal cord
7
adipose tissue
7
lymphocyte
7
psoas muscle
7
spleen
6
MCF-7
6
adipocyte
6
dendritic cell
6
heart left ventricle
6
sigmoid colon
5
body of pancreas
5
gastrocnemius medialis
5
muscle of trunk
5
ovary
5
thyroid gland
5
transverse colon
4
CyT49
4
HUES8
4
chorionic villus
4
endocrine pancreas
4
heart right ventricle
4
iPSC derived cell line
4
neural progenitor cell
4
pancreas
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
aorta
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
chorion membrane
3
coronary artery
3
endometrium adenocarcinoma
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
mesenchymal stem cell
3
retina
3
skeletal muscle tissue
3
testis
3
tibial nerve
3
upper lobe of left lung
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T47D
2
THP-1
2
U937
2
angular gyrus
2
ascending aorta
2
bipolar neuron
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
duodenal mucosa
2
endodermal cell
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
frontal cortex
2
iPS DF 19.11
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
mesendoderm
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
omental fat pad
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
thoracic aorta
2
tibial artery
2
tongue
2
trophoblast
2
trophoblast cell
2
urinary bladder
2
uterus
2
vagina
1
8988T
1
A172
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
Ammon's horn
1
BE(2)-C
1
BJ cell
1
C4-2B
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
EndoC_BH1
1
G401
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12875
1
GM12891
1
GM12892
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM23248
1
GM23338
1
H4
1
H54
1
HCT-116 cell
1
HEK293
1
HEK293T
Organ
2
blood
2
bodily fluid
Life stage
1
adult
Date released
1
February, 2024
1
September, 2022
Software used
nospecificsoft_customcode
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_type!
primary cell
software_used.software.name!
nospecificsoft_customcode
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR353VNN
released
Annotation file set
: Target gene predictions from Hi-C on lympoblastoid cell lines from 1000G individuals. GM19240
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR140ZDV
released
Annotation file set
: Target gene predictions for BSS00473 GM19240 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP