Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
31
histone modifications
11
candidate regulatory elements
6
target gene predictions
5
accessible chromatin
3
gene expression
2
chromatin state
1
binding sites
Annotation Category
6
Target gene links
Annotation type Category
4
DNase-seq
3
ATAC-seq
2
ChIP-seq
2
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
4
primary cell
2
in vitro differentiated cells
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
21
stomach
19
A549
19
CD14-positive monocyte
19
HFFc6
19
heart
16
adrenal gland
16
brain
16
lung
16
muscle of arm
16
small intestine
15
placenta
14
common myeloid progenitor, CD34-positive
14
kidney
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
12
thymus
11
right lung
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
pituitary stalk
10
right kidney
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
GM12878
8
H9
8
liver
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
adipose tissue
7
endothelial cell
7
lymphocyte
7
smooth muscle cell
7
spleen
7
trophoblast cell
6
MCF-7
6
adipocyte
6
dendritic cell
6
mononuclear cell
6
olfactory receptor cell
6
sigmoid colon
5
body of pancreas
5
gastrocnemius medialis
5
heart left ventricle
5
keratinocyte
5
muscle of trunk
5
natural killer cell
5
ovary
5
psoas muscle
5
thyroid gland
5
transverse colon
4
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
T cell
4
astrocyte
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
hepatocyte
4
iPSC derived cell line
4
mammary gland epithelial cell
4
neural progenitor cell
4
pancreatic delta cell
4
regulatory T cell
3
HCT116
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
breast epithelium
3
caudate nucleus
3
chorion membrane
3
coronary artery
3
endometrium adenocarcinoma
3
endothelial cell of umbilical vein
3
epithelial cell of prostate
3
foreskin fibroblast
3
heart right ventricle
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
macrophage
3
mesenchymal stem cell
3
naive T cell
3
neurosphere
3
pancreas
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
retina
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
skin fibroblast
3
testis
3
tibial nerve
3
type B pancreatic cell
3
upper lobe of left lung
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
HepG2
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
T47D
2
THP-1
2
U937
2
angular gyrus
2
aorta
2
ascending aorta
2
bipolar neuron
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
frontal cortex
2
gabaergic neuron
2
glutamatergic neuron
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
memory B cell
2
mesendoderm
2
monocyte
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neutrophil
2
omental fat pad
2
osteoblast
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle satellite cell
2
smooth muscle cell of the esophagus
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
thoracic aorta
2
tibial artery
2
tongue
2
trophoblast
2
type II pneumocyte
2
urinary bladder
2
uterus
Organ
2
embryo
Life stage
2
embryonic
Date released
2
May, 2021
2
September, 2022
1
January, 2021
1
November, 2021
Software used
3
abc
2
r
chicago
1
cicero
Lab
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
4
AMP
1
ENCODE
1
T1D
RFA
4
AMP
1
ENCODE3
1
T1D
files.file_type!
bed bed9+
month_released!
March, 2020
software_used.software.name!
chicago
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR591WHX
released
Annotation file set
: Target gene predictions for BSS00287 endodermal cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR316AAS
released
Annotation file set
: Target gene predictions for BSS00285 endodermal cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D