Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
7
target gene predictions
2
binding sites
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
7
Target gene links
Annotation type Category
6
HiC
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
6
GRCh38
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
52
HeLa-S3
38
H1-hESC
19
HFFc6
17
K562
10
pituitary stalk
7
GM12878
7
H9
6
lymphocyte
4
CyT49
4
HUES8
4
iPSC derived cell line
2
BJAB cell
2
HCT116
2
HepG2
2
Jurkat
2
MCF 10A cell
2
THP-1
2
U937
1
A549
1
A673
1
B-lymphoblastoid cell line
1
EndoC_BH1
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
H7-hESC
1
HAP-1
1
HCT-116 cell
1
HT-29
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
fibroblast cell line
1
iPS DF 19.11
1
induced pluripotent stem cell
1
macrophage
1
monocyte
Organ
7
blood
7
bodily fluid
Date released
6
February, 2024
1
May, 2021
September, 2022
Software used
1
abc
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_term_name!
GM06990
medulloblastoma
month_released!
September, 2022
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR413SNG
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in situ crosslinking, with SDS treatment, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR828CUR
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in situ crosslinking, without SDS treatment, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR519UOA
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, NcoI digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR974VNF
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR815MBX
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, with RNase A digestion, without HindIII digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR193AOO
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, HindIII digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR117MIS
released
Annotation file set
: enhancer-gene predicton of GM12878-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP