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Citing CMDGA
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Annotation type
4
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
Annotation Category
4
Target gene links
Annotation type Category
2
HiC
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
3
cell line
1
primary cell
Biosample term
17
small intestine
14
large intestine
7
sigmoid colon
5
transverse colon
4
colon epithelial cell
3
HCT116
3
Peyer's patch
2
HT-29
2
colonic mucosa
2
duodenal mucosa
2
enteric smooth muscle cell
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
1
HCT-116 cell
1
SW480
1
enterocyte of epithelium of small intestine
1
paneth cell
1
rectum smooth muscle tissue
1
small intestine goblet cell
Disease term
1
colorectal adenocarcinoma
Organ
4
intestine
3
large intestine
1
epithelium
1
small intestine
Life stage
1
adult
Date released
2
February, 2024
1
November, 2021
1
September, 2022
Software used
1
abc
1
r
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
organ_slims!
vagina
Showing 4 of 4 results
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Download
FileSet
DSR311TAK
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. wild-type
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162XYA
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. WAPL KD
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR292ELJ
released
Annotation file set
: Target gene predictions for BSS00492 HCT116 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR802OCO
released
Annotation file set
: Target gene predictions of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE