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Schema
Citing CMDGA
Clear Filters
Annotation type
8
accessible chromatin
4
target gene predictions
3
differential activity
3
gene expression
2
candidate regulatory elements
2
histone modifications
1
binding sites
1
chromatin state
1
variant allelic effects
Annotation Category
4
Target gene links
Annotation type Category
2
ATAC-seq
2
DNase-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Biosample term
16
muscle of arm
14
muscle of leg
13
muscle of back
8
psoas muscle
5
body of pancreas
5
gastrocnemius medialis
5
muscle of trunk
5
pancreas
4
endocrine pancreas
4
pancreatic delta cell
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
skeletal muscle tissue
3
type B pancreatic cell
2
A673
2
Panc1
2
esophagus muscularis mucosa
2
skeletal muscle satellite cell
2
stomach smooth muscle
1
8988T
1
EndoC_BH1
1
HPDE6-E6E7
1
LHCN-M2
1
SJCRH30
1
gastroesophageal sphincter
1
islet of Langerhans
1
myotube
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
rectum smooth muscle tissue
1
skeletal muscle cell
1
type I muscle cell
1
type II muscle cell
Organ
3
epithelium
3
pancreas
1
musculature of body
Life stage
1
adult
Date released
1
January, 2021
1
May, 2021
1
November, 2021
1
September, 2022
Software used
2
abc
1
cicero
1
r
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
2
AMP
1
ENCODE
1
T1D
RFA
2
AMP
1
ENCODE3
1
T1D
Showing 4 of 4 results
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Download
FileSet
DSR757MOL
released
Annotation file set
: Target gene predictions for BSS01155 LHCN-M2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR410PLO
released
Annotation file set
: Target gene predictions of Pancreatic Acinar Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR328CUT
released
Annotation file set
: enhancer-gene predicton of pancreatic-acinar-cell-AMP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR521RYC
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of acinar
Lab:
Kyle Gaulton, UCSD
Project:
T1D