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Schema
Citing CMDGA
Clear Filters
Annotation type
8
target gene predictions
7
accessible chromatin
6
chromatin state
5
candidate regulatory elements
4
gene expression
2
binding sites
2
histone modifications
1
variant allelic effects
Annotation Category
8
Target gene links
Annotation type Category
7
DNase-seq
5
ATAC-seq
5
H3K27ac ChIP-Seq
2
ChIP-seq
1
snATAC-seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
cell line
1
primary cell
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
21
stomach
20
heart
19
A549
19
HFFc6
18
CD14-positive monocyte
17
adrenal gland
17
lung
17
small intestine
16
brain
16
muscle of arm
15
placenta
14
kidney
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
11
common myeloid progenitor, CD34-positive
11
right lung
10
B cell
10
liver
10
pericyte cell
10
pituitary stalk
10
right kidney
9
endothelial cell
9
hematopoietic multipotent progenitor cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
GM12878
8
H9
8
adipose tissue
8
psoas muscle
8
spinal cord
8
spleen
7
heart left ventricle
7
lymphocyte
7
natural killer cell
7
sigmoid colon
7
smooth muscle cell
7
trophoblast cell
6
MCF-7
6
adipocyte
6
dendritic cell
6
fibroblast
6
macrophage
6
olfactory receptor cell
6
ovary
5
CD8-positive, alpha-beta T cell
5
CD8-positive, alpha-beta memory T cell
5
body of pancreas
5
gastrocnemius medialis
5
heart right ventricle
5
mononuclear cell
5
muscle of trunk
5
neural progenitor cell
5
pancreas
5
thyroid gland
5
transverse colon
4
CyT49
4
HUES8
4
aorta
4
chorionic villus
4
endothelial cell of umbilical vein
4
foreskin keratinocyte
4
hepatocyte
4
iPSC derived cell line
4
mesenchymal stem cell
4
pancreatic delta cell
3
CD4-positive, alpha-beta T cell
3
CD4-positive, alpha-beta memory T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
T cell
3
astrocyte
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
colon epithelial cell
3
coronary artery
3
endocrine pancreas
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
esophagus
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
mammary gland epithelial cell
3
mast cell
3
mesendoderm
3
monocyte
3
neurosphere
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
regulatory T cell
3
retina
3
skin fibroblast
3
testis
3
tibial nerve
3
trophoblast
3
type B pancreatic cell
3
upper lobe of left lung
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
SK-N-DZ
2
T-cell
2
T-helper 1 cell
2
T-helper 2 cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
2
ascending aorta
2
bipolar neuron
2
blood vessel smooth muscle cell
2
cardiac muscle cell
2
cerebellum
2
chorion membrane
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
duodenal mucosa
2
endocardial cell
2
endodermal cell
2
enteric smooth muscle cell
2
erythroblast
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
fibroblast of dermis
2
fibroblast of lung
2
frontal cortex
2
gabaergic neuron
2
glutamatergic neuron
2
hepatic stellate cell
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
megakaryocyte
2
memory B cell
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
myoepithelial cell of mammary gland
2
naive B cell
2
naive T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
neuronal stem cell
2
omental fat pad
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right cardiac atrium
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
skeletal muscle tissue
2
smooth muscle cell of the esophagus
2
stomach smooth muscle
2
substantia nigra
Disease term
1
colorectal adenocarcinoma
1
heart failure
Organ
6
connective tissue
Life stage
3
adult
unknown
Date released
5
May, 2021
2
September, 2022
1
May, 2024
Software used
5
abc
2
r
Lab
5
Jesse Engreitz, Stanford University
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
8
AMP
RFA
7
AMP
1
AMP2
biosample_term_name!
myoepithelial cell of mammary gland
relevant_life_stage!
unknown
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR439ZSE
released
Annotation file set
: Target gene predictions from snATAC-seq on adipocyte
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR500ZCJ
released
Annotation file set
: Target gene predictions for BSS01179 LoVo cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR154QOI
released
Annotation file set
: enhancer-gene predicton of LoVo from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP