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Annotation type
5
target gene predictions
4
accessible chromatin
3
candidate regulatory elements
2
chromatin state
1
binding sites
1
histone modifications
Annotation Category
5
Target gene links
Annotation type Category
3
ATAC-seq
2
ChIP-seq
2
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
cell line
Biosample term
14
large intestine
7
sigmoid colon
5
transverse colon
4
colon epithelial cell
3
HCT116
2
HT-29
2
colonic mucosa
2
mucosa of rectum
2
muscle layer of colon
1
HCT-116 cell
1
SW480
1
rectum smooth muscle tissue
Disease term
1
colorectal adenocarcinoma
Organ
5
intestine
5
large intestine
4
epithelium
Life stage
1
adult
1
unknown
Date released
3
November, 2021
2
September, 2022
Software used
3
abc
2
r
Lab
3
Bing Ren, UCSD
2
AMP-T2D consortium
Project
3
ENCODE
2
AMP
RFA
3
ENCODE3
2
AMP
organ_slims!
uterus
Showing 5 of 5 results
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Download
FileSet
DSR610XEI
released
Annotation file set
: Target gene predictions for BSS01682 SW480 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR344FOH
released
Annotation file set
: Target gene predictions for BSS00223 colon epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267UWF
released
Annotation file set
: Target gene predictions of Colon Epithelial Cell 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR015DAN
released
Annotation file set
: Target gene predictions of Colon Epithelial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR659KQD
released
Annotation file set
: Target gene predictions of Colon Epithelial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE