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Schema
Citing CMDGA
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Annotation type
5
chromatin state
5
target gene predictions
3
accessible chromatin
2
candidate regulatory elements
1
binding sites
1
histone modifications
Annotation Category
5
Target gene links
Annotation type Category
5
DNase-seq
4
ATAC-seq
4
H3K27ac ChIP-Seq
1
ChIP-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
52
HeLa-S3
39
H1-hESC
19
HFFc6
19
heart
17
K562
16
brain
16
lung
16
muscle of arm
16
stomach
15
placenta
15
small intestine
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
kidney
11
adrenal gland
11
right lung
10
pituitary stalk
10
right kidney
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
H9
8
spinal cord
7
GM12878
7
lymphocyte
6
dendritic cell
5
adipocyte
5
muscle of trunk
5
neural progenitor cell
4
CyT49
4
HUES8
4
chorionic villus
4
heart left ventricle
4
iPSC derived cell line
4
liver
4
psoas muscle
4
spleen
3
HepG2
3
SK-N-SH
3
chorion membrane
3
heart right ventricle
3
mesenchymal stem cell
3
mesendoderm
3
ovary
3
retina
3
sigmoid colon
3
trophoblast
2
22Rv1
2
A673
2
BJAB cell
2
GM18507
2
H7-hESC
2
HCT116
2
IMR-90
2
Jurkat
2
MCF 10A cell
2
NAMALWA cell
2
PC-9
2
Panc1
2
SK-N-DZ
2
THP-1
2
U937
2
adipose tissue
2
endodermal cell
2
eye
2
iPS DF 19.11
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
pancreas
2
right renal cortex interstitium
2
right renal pelvis
2
tongue
2
trophoblast cell
1
A549
1
AG04449 cell
1
AG04450 cell
1
Ammon's horn
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
CMK
1
CWRU1
1
DND-41
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
EndoC_BH1
1
G401
1
GM03348
1
GM06990
1
GM08714
1
GM12864
1
GM12865
1
GM12891
1
GM12892
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
HAP-1
1
HCT-116 cell
1
HEK293
1
HEK293T
1
HK-2 cell
1
HT-29
1
HTR-8/Svneo
1
HUES48
1
HUES6
1
HUES64
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
KARPAS-422 cell
1
KOPT-K1
1
L1-S8
1
L1-S8R
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MG63
1
MM.1S
1
NCCIT cell
1
NCI-H460 cell
1
NT2-D1 cell
1
OCI-LY7
1
SJCRH30
1
SK-N-MC
1
UCSF-4
1
WERI-Rb-1
1
WI38
1
amnion
1
aorta
1
arm bone
1
beige adipocyte
1
bipolar neuron
1
bladder (urinary bladder)
1
body of pancreas
1
breast epithelium
1
cardiac mesoderm primordium
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiac ventricle
1
cardiomyocytes (cardiac muscle cell)
1
colon carcinoma
1
colon epithelial cell
1
coronary artery
1
dorsolateral prefrontal cortex
1
ectodermal cell
1
embryonic facial prominence
1
embryonic stem cell
1
endocrine pancreas
1
esophagus
1
femur
1
fibroblast cell line
1
foreskin fibroblast
1
gastric (mucosa of stomach)
1
gastrocnemius medialis
1
germinal center
1
germinal matrix
1
hematopoietic multipotent progenitor cell
1
hepatocyte
1
iPS DF 19.7
1
iPS DF 4.7 Cell Line
1
iPS DF 6.9
1
induced pluripotent stem cell
1
islet precursor cell
1
left cardiac atrium
1
leg bone
1
macrophage
1
medulloblastoma
1
mesodermal cell
1
monocyte
1
myotube
1
neural cell
1
neuron
1
neuronal stem cell
1
right cardiac atrium
1
skeletal muscle myoblast
1
skeletal muscle tissue
1
skin of body
1
smooth muscle cell
1
testis
1
thyroid gland
Organ
5
connective tissue
Life stage
adult
1
unknown
Date released
4
May, 2021
1
September, 2022
Software used
4
abc
1
r
Lab
4
Jesse Engreitz, Stanford University
1
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_type!
primary cell
files.file_type!
bam
month_released!
October, 2019
relevant_life_stage!
adult
Showing 5 of 5 results
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Download
FileSet
DSR619LYX
released
Annotation file set
: Target gene predictions for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP