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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
4
target gene predictions
3
accessible chromatin
3
chromatin state
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
4
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
pCHi-C
1
snATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
primary cell
1
stem cell
Biosample term
20
heart
19
stomach
17
lung
16
brain
16
muscle of arm
16
small intestine
15
adrenal gland
14
kidney
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
13
thymus
11
right lung
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
right kidney
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
liver
9
renal cortex interstitium
9
renal pelvis
7
CD8-positive, alpha-beta memory T cell
7
adipose tissue
7
endothelial cell
7
heart left ventricle
7
psoas muscle
7
smooth muscle cell
7
spinal cord
7
spleen
6
mononuclear cell
6
olfactory receptor cell
6
sigmoid colon
5
heart right ventricle
5
neural progenitor cell
5
ovary
5
trophoblast cell
4
CD14-positive monocyte
4
T cell
4
aorta
4
body of pancreas
4
chorionic villus
4
endocrine pancreas
4
fibroblast
4
fibroblast of cardiac tissue
4
foreskin keratinocyte
4
gastrocnemius medialis
4
keratinocyte
4
mammary gland epithelial cell
4
muscle of trunk
4
natural killer cell
4
pancreas
4
pancreatic delta cell
4
regulatory T cell
4
thyroid gland
4
transverse colon
3
CD4-positive, alpha-beta T cell
3
CD8-positive, alpha-beta T cell
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
astrocyte
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
chorion membrane
3
colon epithelial cell
3
endothelial cell of umbilical vein
3
esophagus
3
fibroblast of dermis
3
fibroblast of lung
3
hepatocyte
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
macrophage
3
mesenchymal stem cell
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic alpha cell
3
pancreatic beta cell
3
retina
3
skeletal muscle tissue
3
skin fibroblast
3
testis
3
tibial nerve
3
trophoblast
3
upper lobe of left lung
2
Ammon's horn
2
Brodmann (1909) area 46
2
activated CD4-positive, alpha-beta T cell
2
adipocyte
2
angular gyrus
2
ascending aorta
2
blood vessel smooth muscle cell
2
breast epithelium
2
bronchial epithelial cell
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
coronary artery
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
frontal cortex
2
gabaergic neuron
2
glutamatergic neuron
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
megakaryocyte
2
memory B cell
2
mesendoderm
2
monocyte
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
omental fat pad
2
pancreatic A cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right cardiac atrium
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
smooth muscle cell of the esophagus
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
thoracic aorta
2
tibial artery
2
tongue
2
type B pancreatic cell
2
type II pneumocyte
2
urinary bladder
2
vagina
1
CD1c-positive myeloid dendritic cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar macrophage
1
amnion
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
arm bone
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
basal cell
1
basal cell of epidermis
1
bipolar neuron
1
bladder (urinary bladder)
1
brain microvascular endothelial cell
1
cardiac endothelial cell
1
cardiac mesoderm primordium
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cell
1
cerebellar cortex
1
choroid plexus epithelial cell
1
ciliated cell
1
club cell
1
colon goblet cell
1
conventional dendritic cell
1
dorsolateral prefrontal cortex
1
eccrine cell
1
ectodermal cell
1
embryonic facial prominence
1
embryonic stem cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
Organ
3
connective tissue
Life stage
2
adult
1
embryonic
Date released
2
September, 2022
1
January, 2022
1
March, 2020
May, 2021
Software used
2
r
1
cicero
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
4
AMP
RFA
4
AMP
biosample_type!
cell line
month_released!
May, 2021
Showing 4 of 4 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR751QTO
released
Annotation file set
: Co-accessibility linking chromatin sites across human cell snATAC-seq
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP