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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
4
target gene predictions
3
differential activity
1
gene expression
1
variant allelic effects
Annotation Category
4
Target gene links
Annotation type Category
4
snATAC-seq
Available data
4
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
conventional dendritic cell
1
endothelial cell
1
macrophage
1
megakaryocyte
1
memory B cell
1
monocyte
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
natural killer cell mediated cytotoxicity
1
non-classical monocyte
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
plasmacytoid dendritic cell
1
regulatory T cell
1
stellate neuron
Organ
3
epithelium
3
pancreas
Life stage
1
adult
Date released
3
January, 2021
1
September, 2022
Software used
4
cicero
Lab
4
Kyle Gaulton, UCSD
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
3
T1D
1
AMP
RFA
3
T1D
1
AMP
relevant_life_stage!
unknown
Showing 4 of 4 results
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Download
FileSet
DSR078DAN
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSTlow_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR092ALL
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSThigh_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR236XNZ
released
Annotation file set
: pancreatic delta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP