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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
candidate regulatory elements
7
target gene predictions
5
chromatin state
3
accessible chromatin
2
binding sites
1
eQTL
1
gene expression
1
histone modifications
1
variant allelic effects
Annotation Category
7
Target gene links
Annotation type Category
6
DNase-seq
5
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
6
tissue
1
primary cell
Biosample term
16
brain
10
pituitary stalk
6
ovary
3
SK-N-SH
3
caudate nucleus
3
layer of hippocampus
3
testis
2
Ammon's horn
2
Brodmann (1909) area 46
2
SK-N-DZ
2
angular gyrus
2
cerebellum
2
cingulate gyrus
2
frontal cortex
2
substantia nigra
2
temporal lobe
1
A172
1
BE(2)-C
1
Daoy
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
H54
1
M059J
1
NT2-D1 cell
1
SK-N-MC
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
cerebellar cortex
1
choroid plexus epithelial cell
1
dorsolateral prefrontal cortex
1
globus pallidus
1
inferior parietal cortex
1
luteal cell
1
medulla oblongata
1
medulloblastoma
1
midbrain
1
middle frontal gyrus
1
pons
1
putamen
1
undifferentiated ESC (H9 cell line)
Organ
6
gonad
6
ovary
1
brain
1
epithelium
1
vasculature
Life stage
3
adult
1
embryonic
1
unknown
Date released
5
September, 2022
1
March, 2020
1
May, 2021
Software used
5
r
1
abc
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
Showing 7 of 7 results
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Download
FileSet
DSR249ZSK
released
Annotation file set
: Target gene predictions for BSS01403 ovary from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR789MNT
released
Annotation file set
: Target gene predictions for BSS01402 ovary from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR594TVG
released
Annotation file set
: Target gene predictions for BSS01401 ovary from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR097PMM
released
Annotation file set
: Target gene predictions for BSS01399 ovary from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR805XSG
released
Annotation file set
: Target gene predictions for BSS00218 choroid plexus epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR547QBE
released
Annotation file set
: enhancer-gene predicton of ovary-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR751JBO
released
Annotation file set
: A target gene prediction annotation in Human Ovary of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP