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Schema
Citing CMDGA
Clear Filters
Annotation type
7
candidate regulatory elements
7
target gene predictions
6
chromatin state
4
binding sites
3
histone modifications
2
accessible chromatin
1
variant allelic effects
Annotation Category
7
Target gene links
Annotation type Category
5
DNase-seq
4
ChIP-seq
3
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
5
primary cell
2
tissue
Biosample term
17
small intestine
14
large intestine
7
sigmoid colon
5
keratinocyte
5
transverse colon
4
colon epithelial cell
4
fibroblast of dermis
4
foreskin keratinocyte
3
HCT116
3
Peyer's patch
3
foreskin fibroblast
3
skin fibroblast
2
HT-29
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
enteric smooth muscle cell
2
iPS DF 19.11
2
lower leg skin
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
1
COLO829
1
GM23248
1
HCT-116 cell
1
RPMI7951
1
SK-MEL-5
1
SW480
1
basal cell of epidermis
1
enterocyte of epithelium of small intestine
1
epidermal melanocyte
1
fibroblast of arm
1
granular cell of epidermis
1
iPS DF 19.7
1
iPS DF 4.7 Cell Line
1
iPS DF 6.9
1
iPS-11a
1
iPS-15b
1
iPS-18a
1
iPS-18c
1
iPS-20b
1
paneth cell
1
rectum smooth muscle tissue
1
skin of body
1
small intestine goblet cell
Organ
5
epithelium
5
skin of body
2
intestine
2
small intestine
Life stage
2
adult
2
unknown
Date released
4
September, 2022
2
November, 2021
1
May, 2021
Software used
4
r
3
abc
Lab
4
AMP-T2D consortium
2
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
5
AMP
2
ENCODE
RFA
5
AMP
2
ENCODE3
organ_slims!
mouth
Showing 7 of 7 results
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Download
FileSet
DSR125EUW
released
Annotation file set
: Target gene predictions for BSS01071 keratinocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR555IYR
released
Annotation file set
: Target gene predictions for BSS01068 keratinocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR898NWC
released
Annotation file set
: Target gene predictions for BSS00271 duodenal mucosa from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR037SHY
released
Annotation file set
: Target gene predictions for BSS00270 duodenal mucosa from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR681TKD
released
Annotation file set
: Target gene predictions of Keratinocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR385FIQ
released
Annotation file set
: Target gene predictions of Keratinocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR926EGV
released
Annotation file set
: enhancer-gene predicton of keratinocyte-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP