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Schema
Citing CMDGA
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Annotation type
3
candidate regulatory elements
3
target gene predictions
2
accessible chromatin
Annotation Category
3
Target gene links
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
GRCh38
1
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
3
endothelial cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
2
fibroblast
2
macrophage
2
natural killer cell
1
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
cholangiocyte
1
conventional dendritic cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
erythrocyte
1
hepatic stellate cell
1
hepatocyte
1
mast cell
1
megakaryocyte
1
memory B cell
1
monocyte
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neuronal stem cell
1
non-classical monocyte
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
pericyte cell
1
plasmacytoid dendritic cell
1
regular ventricular cardiac myocyte
1
regulatory T cell
1
stellate neuron
Disease term
1
heart failure
1
liver disease
Organ
3
epithelium
Life stage
2
adult
Date released
2
May, 2024
1
January, 2021
Software used
1
cicero
Lab
6
Bing Ren, UCSD
3
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Project
2
AMP
1
T1D
RFA
2
AMP2
1
T1D
biosample_term_name!
heart right ventricle
right renal cortex interstitium
Showing 3 of 3 results
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Download
FileSet
DSR333MSW
released
Annotation file set
: Target gene predictions from snATAC-seq on endothelial cell
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR114XXL
released
Annotation file set
: Target gene predictions from snATAC-seq on endothelial cell
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D