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Schema
Citing CMDGA
Clear Filters
Annotation type
10
candidate regulatory elements
8
target gene predictions
5
chromatin state
2
accessible chromatin
Annotation Category
8
Target gene links
Annotation type Category
6
DNase-seq
5
ChIP-seq
2
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
tissue
1
primary cell
Biosample term
17
small intestine
14
large intestine
9
renal pelvis
7
sigmoid colon
5
transverse colon
4
colon epithelial cell
3
HCT116
3
Peyer's patch
2
HT-29
2
colonic mucosa
2
duodenal mucosa
2
enteric smooth muscle cell
2
left renal pelvis
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
right renal pelvis
1
HCT-116 cell
1
SW480
1
enterocyte of epithelium of small intestine
1
paneth cell
1
rectum smooth muscle tissue
1
small intestine goblet cell
Organ
8
intestine
7
large intestine
1
epithelium
1
small intestine
0
ureter
Life stage
4
adult
1
child
Date released
5
September, 2022
1
March, 2020
1
May, 2021
1
November, 2021
Software used
5
r
2
abc
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
7
AMP
1
ENCODE
RFA
7
AMP
1
ENCODE3
month_released!
August, 2017
Showing 8 of 8 results
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Download
FileSet
DSR210CXW
released
Annotation file set
: Target gene predictions for BSS01548 sigmoid colon from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR120ZJL
released
Annotation file set
: Target gene predictions for BSS01547 sigmoid colon from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR255CFA
released
Annotation file set
: Target gene predictions for BSS01545 sigmoid colon from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR205RPT
released
Annotation file set
: Target gene predictions for BSS01543 sigmoid colon from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR759TNV
released
Annotation file set
: Target gene predictions for BSS01542 sigmoid colon from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR802OCO
released
Annotation file set
: Target gene predictions of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR284ZHE
released
Annotation file set
: enhancer-gene predicton of sigmoid_colon-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR074OIQ
released
Annotation file set
: A target gene prediction annotation in Human Sigmoid Colon of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP