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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
21
accessible chromatin
6
target gene predictions
6
variant allelic effects
5
binding sites
4
histone modifications
2
candidate regulatory elements
2
eQTL
2
gene expression
1
chromatin state
Annotation Category
6
Target gene links
Annotation type Category
5
ATAC-seq
2
DNase-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
4
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
17
adrenal gland
10
pericyte cell
8
adipose tissue
6
adipocyte
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
mesenchymal stem cell
3
foreskin fibroblast
3
skin fibroblast
2
cortical cell of adrenal gland
2
omental fat pad
2
osteoblast
1
GM23248
1
HT1080
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
adult endothelial progenitor cell
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
beige adipocyte
1
fat cell
1
fibroblast of arm
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
hepatic stellate cell
1
luteal cell
1
pancreatic stellate cell
1
stromal cell
1
stromal cell of bone marrow
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
white adipose cell
1
white adipose tissue
Organ
6
connective tissue
0
adrenal gland
Life stage
1
unknown
Date released
4
November, 2021
1
May, 2021
1
September, 2022
Software used
5
abc
1
r
Lab
4
Bing Ren, UCSD
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
ENCODE
2
AMP
RFA
4
ENCODE3
2
AMP
organ_slims!
vasculature
Showing 6 of 6 results
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Download
FileSet
DSR608JCL
released
Annotation file set
: Target gene predictions for BSS01397 osteoblast from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR418HFM
released
Annotation file set
: Target gene predictions of Fibroblast (Peripheral Nerve) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR611CKC
released
Annotation file set
: Target gene predictions of Fibroblast (Liver Adrenal) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR825WFK
released
Annotation file set
: Target gene predictions of Fibroblast (Gastrointestinal) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR277AWO
released
Annotation file set
: Target gene predictions of Fibroblast (General) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR069ZRF
released
Annotation file set
: enhancer-gene predicton of osteoblast-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP