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Schema
Citing CMDGA
Clear Filters
Annotation type
13
gene expression
8
accessible chromatin
5
target gene predictions
4
candidate regulatory elements
4
histone modifications
2
chromatin state
2
variant allelic effects
1
binding sites
Annotation Category
5
Target gene links
Annotation type Category
3
DNase-seq
2
ATAC-seq
2
ChIP-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
10
liver
5
hepatocyte
3
HepG2
2
hepatic stellate cell
1
HuH-7
1
HuH-7.5
1
right lobe of liver
Disease term
1
liver disease
Organ
5
epithelium
5
liver
Life stage
1
adult
1
embryonic
1
unknown
Date released
2
September, 2022
1
May, 2021
1
May, 2024
1
November, 2021
Software used
2
abc
2
r
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
4
AMP
1
ENCODE
RFA
3
AMP
1
AMP2
1
ENCODE3
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Showing 5 of 5 results
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Download
FileSet
DSR046FLF
released
Annotation file set
: Target gene predictions from snATAC-seq on hepatocyte
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR926ULW
released
Annotation file set
: Target gene predictions for BSS00556 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR361WHM
released
Annotation file set
: Target gene predictions for BSS00554 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR943ZIF
released
Annotation file set
: Target gene predictions of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR604IOP
released
Annotation file set
: enhancer-gene predicton of hepatocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP