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Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
accessible chromatin
3
chromatin state
3
target gene predictions
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
3
Target gene links
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
21
stomach
20
heart
19
A549
19
CD14-positive monocyte
19
HFFc6
16
adrenal gland
16
brain
16
lung
16
muscle of arm
16
small intestine
15
placenta
14
common myeloid progenitor, CD34-positive
14
kidney
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
13
thymus
11
right lung
10
B cell
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
liver
9
renal cortex interstitium
9
renal pelvis
8
GM12878
8
H9
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
adipose tissue
7
endothelial cell
7
lymphocyte
7
psoas muscle
7
smooth muscle cell
7
spleen
7
trophoblast cell
6
adipocyte
6
dendritic cell
6
heart left ventricle
6
mononuclear cell
6
olfactory receptor cell
6
sigmoid colon
5
CD8-positive, alpha-beta T cell
5
body of pancreas
5
gastrocnemius medialis
5
keratinocyte
5
muscle of trunk
5
natural killer cell
5
ovary
5
thyroid gland
5
transverse colon
CyT49
4
HUES8
4
T cell
4
astrocyte
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
heart right ventricle
4
hepatocyte
4
iPSC derived cell line
4
macrophage
4
neural progenitor cell
4
pancreas
4
pancreatic delta cell
4
regulatory T cell
3
CD4-positive, alpha-beta T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
aorta
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
chorion membrane
3
coronary artery
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
mesenchymal stem cell
3
monocyte
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
retina
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
skin fibroblast
3
testis
3
tibial nerve
3
type B pancreatic cell
3
upper lobe of left lung
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
2
ascending aorta
2
bipolar neuron
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
erythroblast
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
frontal cortex
2
gabaergic neuron
2
glutamatergic neuron
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
megakaryocyte
2
memory B cell
2
mesendoderm
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
omental fat pad
2
osteoblast
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle satellite cell
2
smooth muscle cell of the esophagus
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
thoracic aorta
2
tibial artery
2
tongue
Organ
3
connective tissue
Life stage
1
adult
1
embryonic
Date released
2
September, 2022
1
May, 2021
Software used
2
r
1
abc
nospecificsoft_customcode
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
biosample_term_name!
CyT49
files.file_type!
tsv
organ_slims!
mammary gland
software_used.software.name!
nospecificsoft_customcode
Showing 3 of 3 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP