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Getting started
Schema
Clear Filters
Annotation type
3
target gene predictions
2
accessible chromatin
Annotation Category
3
Target gene links
Annotation type Category
1
ATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
GRCh38
1
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
86
head of caudate nucleus
64
T-cell
59
HeLa-S3
57
dorsolateral prefrontal cortex
55
stimulated activated CD4-positive, alpha-beta T cell
52
CD4-positive, alpha-beta T cell
48
posterior cingulate gyrus
42
stomach
39
H1-hESC
38
heart
37
placenta
33
A549
33
muscle of arm
32
adrenal gland
32
brain
31
activated CD4-positive, alpha-beta T cell
31
lung
30
K562
30
small intestine
28
fibroblast
28
kidney
28
large intestine
28
left lung
28
muscle of back
27
CD14-positive monocyte
27
CD8-positive, alpha-beta T cell
27
muscle of leg
27
stimulated activated CD8-positive, alpha-beta memory T cell
26
common myeloid progenitor, CD34-positive
23
thymus
22
hematopoietic multipotent progenitor cell
22
right lung
20
HFFc6
20
renal cortex interstitium
20
right kidney
19
HCT116
19
renal pelvis
19
smooth muscle cell
18
endothelial cell
18
left kidney
17
heart left ventricle
17
naive thymus-derived CD4-positive, alpha-beta T cell
16
B cell
15
H9
15
activated CD8-positive, alpha-beta memory T cell
15
activated T-cell
15
heart right ventricle
15
naive thymus-derived CD8-positive, alpha-beta T cell
15
ovary
14
CD4-positive, alpha-beta memory T cell
14
macrophage
14
spinal cord
13
MCF-7
13
pancreas
13
psoas muscle
13
spleen
12
T-helper 1 cell
12
T-helper 2 cell
12
keratinocyte
12
liver
12
natural killer cell
12
trophoblast cell
11
CD8-positive, alpha-beta memory T cell
11
gastrocnemius medialis
11
glutamatergic neuron
10
T-helper 17 cell
10
hepatocyte
10
naive B cell
10
pericyte cell
10
pituitary stalk
10
sigmoid colon
10
upper lobe of left lung
9
GM12878
9
body of pancreas
9
thyroid gland
9
transverse colon
8
adipose tissue
8
muscle of trunk
8
suppressor macrophage
7
Peyer's patch
7
activated naive CD4-positive, alpha-beta T cell
7
adipocyte
7
astrocyte
7
dendritic cell
7
foreskin fibroblast
7
lymphocyte
7
pericyte
7
testis
7
thyroid follicular cell
6
aorta
6
dermis blood vessel endothelial cell
6
endothelial cell of umbilical vein
6
fibroblast of lung
6
foreskin keratinocyte
6
inflammatory macrophage
6
left renal cortex interstitium
6
left renal pelvis
6
mononuclear cell
6
neural progenitor cell
6
olfactory receptor cell
6
retina
6
right lobe of liver
6
right renal pelvis
6
tibial nerve
5
CD4-positive, CD25-positive, alpha-beta regulatory T cell
5
HepG2
5
LNCaP clone FGC
5
SK-N-SH
5
T47D
5
breast epithelium
5
cardiac muscle cell
5
cell of skeletal muscle
5
coronary artery
5
erythroblast
5
fibroblast of dermis
5
megakaryocyte
5
mesenchymal stem cell
5
progenitor cell
5
right cardiac atrium
5
right renal cortex interstitium
5
tibial artery
4
A673
4
CyT49
4
GM03348
4
HAP-1
4
HUES8
4
IMR-90
4
Ishikawa
4
PC-9
4
SK-N-DZ
4
T cell
4
activated T-helper 1 cell
4
activated naive CD8-positive, alpha-beta T cell
4
adrenal gland glandular cell
4
ascending aorta
4
bronchial epithelial cell
4
caudate nucleus
4
central memory CD4-positive, alpha-beta T cell
4
chorionic villus
4
colon epithelial cell
4
colonic mucosa
4
endocrine pancreas
4
endodermal cell
4
endothelial cell of lymphatic vessel
4
epithelial cell of prostate
4
eye
4
fibroblast of cardiac tissue
4
frontal cortex
4
iPSC derived cell line
4
kidney tubule cell
4
limb
4
lower leg skin
4
mammary epithelial cell
4
mammary gland epithelial cell
4
memory B cell
4
mesendoderm
4
muscle precursor cell
4
omental fat pad
4
pancreatic delta cell
4
regulatory T cell
4
right atrium auricular region
4
skeletal muscle myoblast
4
tongue
4
type B pancreatic cell
4
uterus
4
vagina
3
Ammon's horn
3
Caco-2
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23338
3
H1
3
HL-60
3
HT-29
3
MCF 10A
3
MG63
3
MM.1S
3
OCI-LY7
3
Panc1
3
SJCRH30
3
SJSA1
3
WERI-Rb-1
3
WI38
3
activated CD8-positive, alpha-beta T cell
3
activated effector memory CD4-positive, alpha-beta T cell
3
bipolar neuron
3
brain microvascular endothelial cell
3
cardiac fibroblast
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
double-positive, alpha-beta thymocyte
3
effector memory CD4-positive, alpha-beta T cell
3
effector memory CD8-positive, alpha-beta T cell
3
endocardial cell
3
endometrium adenocarcinoma
3
endothelial cell of vascular tree
3
epithelial cell of esophagus
Organ
1
adrenal gland
1
connective tissue
1
thyroid gland
Life stage
2
fetal
Date released
2
July, 2026
1
November, 2021
Software used
1
abc
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
Collection Tags
2
HDMA
1
AMP
1
T2DKP
RFA
2
AMP
1
ENCODE3
Showing 3 of 3 results
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Download
FileSet
DSR005535
released
Annotation file set
: Target gene predictions for Thyroid stromal (unclear markers but still has NKAIN3, P3H2 expression)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR557705
released
Annotation file set
: Target gene predictions for Adrenal stromal (COL3A1+ TRPC6+; possibly mix of fibroblasts & pericytes; mix of all samples)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619FXG
released
Annotation file set
: Target gene predictions of Peripheral Nerve Stromal from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE