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Schema
Citing CMDGA
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Annotation type
8
candidate regulatory elements
7
target gene predictions
6
chromatin state
4
accessible chromatin
3
variant allelic effects
2
binding sites
Annotation Category
7
Target gene links
Annotation type Category
4
DNase-seq
3
ATAC-seq
3
ChIP-seq
1
H3K27ac ChIP-Seq
1
HiC
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
7
tissue
Biosample term
4
endothelial cell of umbilical vein
2
smooth muscle cell of the esophagus
1
epithelial cell of esophagus
Organ
114
epithelium
50
connective tissue
26
skin of body
24
pancreas
18
vasculature
12
blood vessel
11
mammary gland
9
extraembryonic component
9
kidney
8
heart
8
intestine
8
lung
7
penis
5
embryo
5
musculature of body
4
adrenal gland
4
brain
4
liver
4
stomach
4
vein
3
artery
3
bone element
3
bone marrow
3
bronchus
3
esophagus
3
eye
3
large intestine
3
lymphatic vessel
3
prostate gland
2
small intestine
1
gonad
1
limb
mouth
1
ovary
1
placenta
1
spinal cord
1
thyroid gland
1
uterus
Life stage
2
newborn
1
unknown
Date released
3
September, 2022
2
November, 2021
1
March, 2020
1
May, 2021
Software used
3
abc
3
r
1
hiccups
Lab
4
AMP-T2D consortium
2
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
5
AMP
2
ENCODE
RFA
5
AMP
2
ENCODE3
organ_slims!
mouth
Showing 7 of 7 results
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Download
FileSet
DSR005XGT
released
Annotation file set
: Target gene predictions for BSS00307 epithelial cell of esophagus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR936NVU
released
Annotation file set
: Target gene predictions for BSS00298 endothelial cell of umbilical vein from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR099GIV
released
Annotation file set
: Target gene predictions for BSS00296 endothelial cell of umbilical vein from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR738CKV
released
Annotation file set
: Target gene predictions of Smooth Muscle (Esophageal Muscularis) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR513MXE
released
Annotation file set
: Target gene predictions of Smooth Muscle (Esophageal Muscularis) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR784TGC
released
Annotation file set
: enhancer-gene predicton of endothelial_cell_of_umbilical_vein-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR049KAF
released
Annotation file set
: A target gene prediction annotation in endothelial cell of umbilical vein of DSR430XOJ Hi-C
Lab:
AMP-T2D consortium
Project:
AMP