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Schema
Citing CMDGA
Clear Filters
Annotation type
12
binding sites
7
accessible chromatin
7
target gene predictions
5
histone modifications
4
candidate regulatory elements
3
chromatin state
1
variant allelic effects
Annotation Category
7
Target gene links
Annotation type Category
5
ATAC-seq
4
DNase-seq
2
ChIP-seq
2
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
6
primary cell
1
cell line
Biosample term
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
1
MCF-7
1
fibroblast of mammary gland
1
mammary epithelial cell
Organ
106
epithelium
83
embryo
66
kidney
62
connective tissue
62
musculature of body
54
lung
54
uterus
46
intestine
44
brain
38
blood
38
bodily fluid
37
heart
37
limb
36
extraembryonic component
31
skin of body
28
pancreas
26
large intestine
21
stomach
19
vasculature
17
placenta
17
small intestine
15
adrenal gland
14
thymus
13
blood vessel
13
ureter
11
liver
11
penis
10
pituitary gland
9
bone element
9
eye
9
spinal cord
7
mammary gland
6
gonad
6
prostate gland
5
adipose tissue
5
lymph node
4
artery
4
esophagus
4
ovary
4
spleen
4
vein
3
bone marrow
3
bronchus
3
lymphatic vessel
3
lymphoid tissue
3
mouth
3
skeleton
2
testis
2
thyroid gland
2
tongue
2
urinary bladder
1
breast
Life stage
adult
2
unknown
Date released
3
November, 2021
2
May, 2021
2
September, 2022
Software used
5
abc
2
r
Lab
3
Bing Ren, UCSD
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
4
AMP
3
ENCODE
RFA
4
AMP
3
ENCODE3
month_released!
April, 2020
relevant_life_stage!
adult
Showing 7 of 7 results
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Download
FileSet
DSR947KWU
released
Annotation file set
: Target gene predictions for BSS01209 mammary gland epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR802BSP
released
Annotation file set
: Target gene predictions for BSS00343 fibroblast of mammary gland from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR154LWM
released
Annotation file set
: Target gene predictions of Mammary Luminal Epithelial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR114GRY
released
Annotation file set
: Target gene predictions of Mammary Luminal Epithelial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR990AWB
released
Annotation file set
: Target gene predictions of Mammary Epithelial from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR249DLQ
released
Annotation file set
: enhancer-gene predicton of MCF-7-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR379EHB
released
Annotation file set
: enhancer-gene predicton of mammary_epithelial_cell-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP