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Getting started
Schema
Clear Filters
Annotation type
3018
target gene predictions
2638
pQTL
1709
candidate regulatory elements
1248
accessible chromatin
977
histone modifications
944
chromatin state
817
binding sites
685
gene expression
484
differential activity
180
eQTL
141
variant allelic effects
74
Fine-mapped variants
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
3018
Target gene links
Annotation type Category
2430
DNase-seq
833
ChIP-seq
250
ATAC-seq
189
HiC
139
H3K27ac ChIP-Seq
47
pCHi-C
32
snATAC-seq
5
Capture-C
Available data
3018
bed bed3+
3
bigBed narrowPeak
3
bigWig
File set status
3018
released
Genome assembly (visualization)
1946
GRCh38
1357
hg19
Organism
3018
Homo sapiens
Biosample type
1182
tissue
1118
primary cell
606
cell line
109
in vitro differentiated cells
3
stem cell
Biosample term
86
head of caudate nucleus
64
T-cell
59
HeLa-S3
57
dorsolateral prefrontal cortex
55
stimulated activated CD4-positive, alpha-beta T cell
52
CD4-positive, alpha-beta T cell
48
posterior cingulate gyrus
42
stomach
39
H1-hESC
38
heart
37
placenta
33
A549
33
muscle of arm
32
adrenal gland
32
brain
31
activated CD4-positive, alpha-beta T cell
31
lung
30
K562
30
small intestine
28
fibroblast
28
kidney
28
large intestine
28
left lung
28
muscle of back
27
CD14-positive monocyte
27
CD8-positive, alpha-beta T cell
27
muscle of leg
27
stimulated activated CD8-positive, alpha-beta memory T cell
26
common myeloid progenitor, CD34-positive
23
thymus
22
hematopoietic multipotent progenitor cell
22
right lung
20
HFFc6
20
renal cortex interstitium
20
right kidney
19
HCT116
19
renal pelvis
19
smooth muscle cell
18
endothelial cell
18
left kidney
17
heart left ventricle
17
naive thymus-derived CD4-positive, alpha-beta T cell
16
B cell
15
H9
15
activated CD8-positive, alpha-beta memory T cell
15
activated T-cell
15
heart right ventricle
15
naive thymus-derived CD8-positive, alpha-beta T cell
15
ovary
14
CD4-positive, alpha-beta memory T cell
14
macrophage
14
spinal cord
13
MCF-7
13
pancreas
13
psoas muscle
13
spleen
12
T-helper 1 cell
12
T-helper 2 cell
12
keratinocyte
12
liver
12
natural killer cell
12
trophoblast cell
11
CD8-positive, alpha-beta memory T cell
11
gastrocnemius medialis
11
glutamatergic neuron
10
T-helper 17 cell
10
hepatocyte
10
naive B cell
10
pericyte cell
10
pituitary stalk
10
sigmoid colon
10
upper lobe of left lung
9
GM12878
9
body of pancreas
9
thyroid gland
9
transverse colon
8
adipose tissue
8
muscle of trunk
8
suppressor macrophage
7
Peyer's patch
7
activated naive CD4-positive, alpha-beta T cell
7
adipocyte
7
astrocyte
7
dendritic cell
7
foreskin fibroblast
7
lymphocyte
7
pericyte
7
testis
7
thyroid follicular cell
6
aorta
6
dermis blood vessel endothelial cell
6
endothelial cell of umbilical vein
6
fibroblast of lung
6
foreskin keratinocyte
6
inflammatory macrophage
6
left renal cortex interstitium
6
left renal pelvis
6
mononuclear cell
6
neural progenitor cell
6
olfactory receptor cell
6
retina
6
right lobe of liver
6
right renal pelvis
6
tibial nerve
5
CD4-positive, CD25-positive, alpha-beta regulatory T cell
5
HepG2
5
LNCaP clone FGC
5
SK-N-SH
5
T47D
5
breast epithelium
5
cardiac muscle cell
5
cell of skeletal muscle
5
coronary artery
5
erythroblast
5
fibroblast of dermis
5
megakaryocyte
5
mesenchymal stem cell
5
progenitor cell
5
right cardiac atrium
5
right renal cortex interstitium
5
tibial artery
4
A673
4
CyT49
4
GM03348
4
HAP-1
4
HUES8
4
IMR-90
4
Ishikawa
4
PC-9
4
SK-N-DZ
4
T cell
4
activated T-helper 1 cell
4
activated naive CD8-positive, alpha-beta T cell
4
adrenal gland glandular cell
4
ascending aorta
4
bronchial epithelial cell
4
caudate nucleus
4
central memory CD4-positive, alpha-beta T cell
4
chorionic villus
4
colon epithelial cell
4
colonic mucosa
4
endocrine pancreas
4
endodermal cell
4
endothelial cell of lymphatic vessel
4
epithelial cell of prostate
4
eye
4
fibroblast of cardiac tissue
4
frontal cortex
4
iPSC derived cell line
4
kidney tubule cell
4
limb
4
lower leg skin
4
mammary epithelial cell
4
mammary gland epithelial cell
4
memory B cell
4
mesendoderm
4
muscle precursor cell
4
omental fat pad
4
pancreatic delta cell
4
regulatory T cell
4
right atrium auricular region
4
skeletal muscle myoblast
4
tongue
4
type B pancreatic cell
4
uterus
4
vagina
3
Ammon's horn
3
Caco-2
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23338
3
H1
3
HL-60
3
HT-29
3
MCF 10A
3
MG63
3
MM.1S
3
OCI-LY7
3
Panc1
3
SJCRH30
3
SJSA1
3
WERI-Rb-1
3
WI38
3
activated CD8-positive, alpha-beta T cell
3
activated effector memory CD4-positive, alpha-beta T cell
3
bipolar neuron
3
brain microvascular endothelial cell
3
cardiac fibroblast
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
double-positive, alpha-beta thymocyte
3
effector memory CD4-positive, alpha-beta T cell
3
effector memory CD8-positive, alpha-beta T cell
3
endocardial cell
3
endometrium adenocarcinoma
3
endothelial cell of vascular tree
3
epithelial cell of esophagus
Organ
578
blood
343
brain
189
lung
162
kidney
142
intestine
126
heart
122
epithelium
117
skin of body
96
large intestine
89
muscle organ
84
embryo
83
connective tissue
80
musculature of body
68
uterus
64
extraembryonic component
62
pancreas
57
bodily fluid
51
stomach
50
liver
49
limb
46
adrenal gland
42
eye
41
placenta
41
thymus
38
blood vessel
36
mammary gland
36
small intestine
31
bone element
31
vasculature
25
gonad
25
spleen
24
prostate gland
22
thyroid gland
22
ureter
17
adipose tissue
16
ovary
15
spinal cord
13
artery
13
esophagus
11
penis
10
pituitary gland
9
lymph node
9
testis
7
skeleton
6
lymphoid tissue
6
mouth
6
urinary bladder
5
breast
5
vein
4
tongue
4
vagina
3
bone marrow
3
bronchus
3
lymphatic vessel
3
nerve
1
embryonic structure
1
gallbladder
1
nose
Life stage
366
adult
332
embryonic
204
fetal
98
unknown
34
child
18
newborn
Date released
1661
July, 2026
834
September, 2022
174
February, 2024
139
May, 2021
111
November, 2021
44
March, 2020
28
January, 2021
18
May, 2020
5
September, 2023
2
February, 2021
1
January, 2020
1
January, 2022
Software used
833
r
250
abc
32
cicero
27
chicago
27
nospecificsoft_customcode
14
hiccups
Lab
2731
AMP-T2D consortium
139
Jesse Engreitz, Stanford University
112
Bing Ren, UCSD
31
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Project
2879
AMP
111
ENCODE
28
T1D
Collection Tags
1458
ENCODE-rE2G
833
EpiMap
203
HDMA
188
DGA
174
4DN
116
AMP
112
T2DKP
51
T2DKP
45
T1D
17
BLUEPRINT
RFA
2874
AMP
111
ENCODE3
28
T1D
5
AMP2
type!!!!
Perturbation
Showing 5 of 3018 results
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Download
FileSet
DSR746650
released
Annotation file set
: Target gene predictions for Thyroid parathyroid (CASR, SPOCK3, DNAH11 positive)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR982086
released
Annotation file set
: Target gene predictions for Thyroid thyroid follicular (TPO, TG, TSHR+)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR952567
released
Annotation file set
: Target gene predictions for Thymus medullary TEC (myoid) (PAX7+; high expression of TEC(myo) signature)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR149509
released
Annotation file set
: Target gene predictions for Thymus endothelial cells (PECAM1+/MECOM+)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR158486
released
Annotation file set
: Target gene predictions for Thymus cortical TEC (CDH1+; ADARB2+; SLIT-ROBO signaling; very minor AIRE+ pre-decontX; high expression of Park et al cTEC/mcTEC genes)
Lab:
AMP-T2D consortium
Project:
AMP