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Schema
Citing CMDGA
Clear Filters
Annotation type
25
candidate regulatory elements
24
gene expression
17
chromatin state
17
target gene predictions
14
histone modifications
13
binding sites
11
accessible chromatin
8
eQTL
4
differential activity
3
Fine-mapped variants
3
variant allelic effects
Annotation Category
3
Genetic variant effects
Annotation type Category
2
DNase-seq
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
2
hepatocyte
1
hepatic stellate cell
Organ
39
epithelium
17
brain
15
kidney
12
connective tissue
12
vasculature
9
pancreas
7
heart
7
musculature of body
6
blood vessel
6
limb
3
intestine
3
liver
3
ureter
2
artery
2
esophagus
2
eye
2
stomach
1
adipose tissue
1
adrenal gland
1
bronchus
1
lung
1
mammary gland
1
nerve
1
prostate gland
1
skin of body
1
thyroid gland
1
vein
Life stage
1
adult
Date released
2
May, 2020
1
February, 2024
Software used
3
deltasvm
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
RFA
3
AMP
annotation_type_category!
ATAC-seq
biosample_term_name!
Pancreatic progenitors (progenitor cell of endocrine pancreas)
right renal cortex interstitium
Showing 3 of 3 results
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Download
FileSet
DSR179RJC
released
Annotation file set
: Variant allelic effects annotation of Hepatocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR134FAU
released
Annotation file set
: Variant allelic effects of hepatic stellate cell ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR488RFU
released
Annotation file set
: Genetic variants with deltaSVM predictions in liver hepatocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP