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Citing CMDGA
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Annotation type
16
chromatin state
12
accessible chromatin
10
gene expression
4
target gene predictions
3
differential activity
2
histone modifications
2
variant allelic effects
1
binding sites
1
eQTL
Annotation Category
2
Genetic variant effects
Annotation type Category
1
ATAC-seq
DNase-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
6
fibroblast
3
enterocyte
3
macrophage
3
myofibroblast cell
2
MIN6
2
Schwann cell
2
T cell
2
basal cell
2
endothelial cell
2
epithelial cell of esophagus
2
goblet cell
2
skeletal muscle fiber
2
smooth muscle cell
2
vascular associated smooth muscle cell
1
Adipose SGBS cell line (adipocyte)
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
1
Preadipose SGBS cell line (adipocyte)
1
Satellite Cells, Skeletal Muscle
1
adipocyte
1
adipose tissue
1
bronchial goblet cell
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
coronary artery
1
cortical cell of adrenal gland
1
granulosa cell
1
heart left ventricle
1
hepatocyte
1
islet of Langerhans
1
keratinocyte
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
mesothelial cell
1
naive t cell
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
purified protein and synthetic DNA oligo binding assay
1
right atrium auricular region
1
subcutaneous adipose tissue
1
thoracic aorta
1
thyroid follicular cell
1
tibial artery
1
tibial nerve
1
type II pneumocyte
Organ
1
epithelium
1
pancreas
Life stage
1
adult
1
fetal
Date released
1
February, 2024
1
May, 2020
Software used
2
deltasvm
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
2
AMP
annotation_type_category!
DNase-seq
biosample_term_name!
brain pericyte
Showing 2 of 2 results
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Download
FileSet
DSR298BMZ
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart fetal ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR964IEU
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic delta cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP