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Schema
Citing CMDGA
Clear Filters
Annotation type
16
chromatin state
10
accessible chromatin
7
gene expression
4
variant allelic effects
2
binding sites
2
histone modifications
1
candidate regulatory elements
1
eQTL
1
target gene predictions
Annotation Category
4
Genetic variant effects
Annotation type Category
4
snATAC-seq
DNase-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
6
fibroblast
3
enterocyte
3
macrophage
3
myofibroblast cell
2
MIN6
2
Schwann cell
2
T cell
2
basal cell
2
endothelial cell
2
epithelial cell of esophagus
2
goblet cell
2
skeletal muscle fiber
2
smooth muscle cell
2
vascular associated smooth muscle cell
1
Adipose SGBS cell line (adipocyte)
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
1
Preadipose SGBS cell line (adipocyte)
1
Satellite Cells, Skeletal Muscle
1
adipocyte
1
adipose tissue
1
bronchial goblet cell
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
coronary artery
1
cortical cell of adrenal gland
1
granulosa cell
1
heart left ventricle
1
hepatocyte
1
islet of Langerhans
1
keratinocyte
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
mesothelial cell
1
naive t cell
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
purified protein and synthetic DNA oligo binding assay
1
right atrium auricular region
1
subcutaneous adipose tissue
1
thoracic aorta
1
thyroid follicular cell
1
tibial artery
1
tibial nerve
1
type II pneumocyte
Organ
1
epithelium
Date released
4
February, 2024
Software used
4
deltasvm
Lab
4
Bing Ren, UCSD
Project
4
AMP
RFA
4
AMP
annotation_type_category!
DNase-seq
Showing 4 of 4 results
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Download
FileSet
DSR580SRP
released
Annotation file set
: Variant allelic effects annotation of Myofibroblasts from snATAC (sub-type3) from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR877EWI
released
Annotation file set
: Variant allelic effects annotation of Myofibroblasts from snATAC (sub-type2) from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR897ZAK
released
Annotation file set
: Variant allelic effects annotation of Myofibroblasts from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR198EFG
released
Annotation file set
: Variant allelic effects annotation of Mesothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP