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Schema
Citing CMDGA
Clear Filters
Annotation type
29
candidate regulatory elements
16
target gene predictions
4
variant allelic effects
3
accessible chromatin
3
histone modifications
2
binding sites
Annotation Category
4
Genetic variant effects
Annotation type Category
3
snATAC-seq
1
DNase-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
tissue
Biosample term
6
fibroblast
3
enterocyte
3
macrophage
3
myofibroblast cell
2
cardiac fibroblast
2
muscle of leg
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Schwann cell
2
T cell
2
basal cell
2
cardiac muscle cell
2
coronary artery
2
endothelial cell
2
epithelial cell of esophagus
2
goblet cell
2
heart
2
heart left ventricle
2
hepatocyte
2
right atrium auricular region
2
skeletal muscle fiber
2
smooth muscle cell
2
tibial artery
2
tibial nerve
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
Satellite Cells, Skeletal Muscle
1
adipocyte
1
adipose tissue
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
brain
1
brain pericyte
1
bronchial goblet cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cerebellum (Hemisphere)
1
choroid plexus epithelial cell
1
cortical cell of adrenal gland
1
epithelial cell of proximal tubule
1
frontal cortex
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granulosa cell
1
heart right ventricle
1
islet of Langerhans
1
keratinocyte
1
kidney
1
kidney epithelial cell
1
left cardiac atrium
1
left renal pelvis
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
mesothelial cell
1
muscle of arm
1
naive t cell
occipital lobe
1
pancreas
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
purified protein and synthetic DNA oligo binding assay
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
retina
1
right renal pelvis
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
subcutaneous adipose tissue
1
thoracic aorta
1
thyroid follicular cell
1
type II pneumocyte
Organ
1
brain
Date released
3
February, 2024
1
May, 2020
Software used
4
deltasvm
Lab
3
Bing Ren, UCSD
1
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
occipital lobe
organ_slims!
trachea
Showing 4 of 4 results
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Download
FileSet
DSR580SRP
released
Annotation file set
: Variant allelic effects annotation of Myofibroblasts from snATAC (sub-type3) from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR877EWI
released
Annotation file set
: Variant allelic effects annotation of Myofibroblasts from snATAC (sub-type2) from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR897ZAK
released
Annotation file set
: Variant allelic effects annotation of Myofibroblasts from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR154FEP
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP